Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32785
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,934,089 | + | BPHYT_RS32780 | 0.55 | +0.7 | |
2,934,216 | + | BPHYT_RS32780 | 0.61 | +0.4 | |
2,934,216 | + | BPHYT_RS32780 | 0.61 | -1.1 | |
2,934,238 | + | BPHYT_RS32780 | 0.62 | -0.8 | |
2,934,238 | + | BPHYT_RS32780 | 0.62 | -1.6 | |
2,934,239 | - | BPHYT_RS32780 | 0.62 | -2.3 | |
2,934,239 | - | BPHYT_RS32780 | 0.62 | +0.8 | |
2,934,403 | + | BPHYT_RS32780 | 0.70 | +0.1 | |
2,934,464 | - | BPHYT_RS32780 | 0.73 | +1.2 | |
2,934,470 | - | BPHYT_RS32780 | 0.73 | -1.1 | |
2,934,576 | - | BPHYT_RS32780 | 0.78 | -0.1 | |
2,934,794 | - | BPHYT_RS32780 | 0.88 | -0.1 | |
2,935,243 | + | BPHYT_RS32785 | 0.74 | +0.1 | |
2,935,243 | + | BPHYT_RS32785 | 0.74 | -0.6 | |
2,935,243 | + | BPHYT_RS32785 | 0.74 | -2.5 | |
2,935,244 | - | BPHYT_RS32785 | 0.75 | -1.9 | |
2,935,286 | + | -0.4 | |||
2,935,383 | + | -0.8 | |||
2,935,386 | + | +0.5 | |||
2,935,386 | + | -0.3 | |||
2,935,387 | - | +0.0 | |||
2,935,466 | + | BPHYT_RS32790 | 0.17 | +0.5 | |
2,935,539 | + | BPHYT_RS32790 | 0.24 | -0.4 | |
2,935,812 | + | BPHYT_RS32790 | 0.51 | +0.5 | |
2,935,813 | - | BPHYT_RS32790 | 0.51 | -0.1 |
Or see this region's nucleotide sequence