Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32785

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32780 and BPHYT_RS32785 are separated by 48 nucleotidesBPHYT_RS32785 and BPHYT_RS32790 overlap by 4 nucleotides BPHYT_RS32780: BPHYT_RS32780 - fusaric acid resistance protein, at 2,932,936 to 2,935,038 _RS32780 BPHYT_RS32785: BPHYT_RS32785 - membrane protein, at 2,935,087 to 2,935,296 _RS32785 BPHYT_RS32790: BPHYT_RS32790 - membrane protein, at 2,935,293 to 2,936,303 _RS32790 Position (kb) 2935 2936Strain fitness (log2 ratio) -2 -1 0 1at 2934.089 kb on + strand, within BPHYT_RS32780at 2934.216 kb on + strand, within BPHYT_RS32780at 2934.216 kb on + strand, within BPHYT_RS32780at 2934.238 kb on + strand, within BPHYT_RS32780at 2934.238 kb on + strand, within BPHYT_RS32780at 2934.239 kb on - strand, within BPHYT_RS32780at 2934.239 kb on - strand, within BPHYT_RS32780at 2934.403 kb on + strand, within BPHYT_RS32780at 2934.464 kb on - strand, within BPHYT_RS32780at 2934.470 kb on - strand, within BPHYT_RS32780at 2934.576 kb on - strand, within BPHYT_RS32780at 2934.794 kb on - strand, within BPHYT_RS32780at 2935.243 kb on + strand, within BPHYT_RS32785at 2935.243 kb on + strand, within BPHYT_RS32785at 2935.243 kb on + strand, within BPHYT_RS32785at 2935.244 kb on - strand, within BPHYT_RS32785at 2935.286 kb on + strandat 2935.383 kb on + strandat 2935.386 kb on + strandat 2935.386 kb on + strandat 2935.387 kb on - strandat 2935.466 kb on + strand, within BPHYT_RS32790at 2935.539 kb on + strand, within BPHYT_RS32790at 2935.812 kb on + strand, within BPHYT_RS32790at 2935.813 kb on - strand, within BPHYT_RS32790

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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2,934,089 + BPHYT_RS32780 0.55 +0.7
2,934,216 + BPHYT_RS32780 0.61 +0.4
2,934,216 + BPHYT_RS32780 0.61 -1.1
2,934,238 + BPHYT_RS32780 0.62 -0.8
2,934,238 + BPHYT_RS32780 0.62 -1.6
2,934,239 - BPHYT_RS32780 0.62 -2.3
2,934,239 - BPHYT_RS32780 0.62 +0.8
2,934,403 + BPHYT_RS32780 0.70 +0.1
2,934,464 - BPHYT_RS32780 0.73 +1.2
2,934,470 - BPHYT_RS32780 0.73 -1.1
2,934,576 - BPHYT_RS32780 0.78 -0.1
2,934,794 - BPHYT_RS32780 0.88 -0.1
2,935,243 + BPHYT_RS32785 0.74 +0.1
2,935,243 + BPHYT_RS32785 0.74 -0.6
2,935,243 + BPHYT_RS32785 0.74 -2.5
2,935,244 - BPHYT_RS32785 0.75 -1.9
2,935,286 + -0.4
2,935,383 + -0.8
2,935,386 + +0.5
2,935,386 + -0.3
2,935,387 - +0.0
2,935,466 + BPHYT_RS32790 0.17 +0.5
2,935,539 + BPHYT_RS32790 0.24 -0.4
2,935,812 + BPHYT_RS32790 0.51 +0.5
2,935,813 - BPHYT_RS32790 0.51 -0.1

Or see this region's nucleotide sequence