Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS31205
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,557,378 | + | BPHYT_RS31200 | 0.15 | -0.0 | |
2,557,847 | - | BPHYT_RS31200 | 0.63 | +0.1 | |
2,557,916 | + | BPHYT_RS31200 | 0.70 | +1.0 | |
2,557,980 | - | BPHYT_RS31200 | 0.77 | +0.7 | |
2,558,108 | + | BPHYT_RS31200 | 0.90 | -0.7 | |
2,558,619 | + | BPHYT_RS31205 | 0.40 | +0.8 | |
2,558,899 | + | BPHYT_RS31205 | 0.67 | +1.7 | |
2,558,962 | + | BPHYT_RS31205 | 0.73 | +2.0 | |
2,559,422 | + | BPHYT_RS31210 | 0.11 | +0.2 | |
2,559,605 | - | BPHYT_RS31210 | 0.22 | -0.6 | |
2,559,755 | + | BPHYT_RS31210 | 0.32 | -1.2 | |
2,559,844 | + | BPHYT_RS31210 | 0.37 | -1.9 | |
2,559,891 | + | BPHYT_RS31210 | 0.40 | +0.2 |
Or see this region's nucleotide sequence