Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30490

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS30485 and BPHYT_RS30490 are separated by 65 nucleotidesBPHYT_RS30490 and BPHYT_RS30495 are separated by 4 nucleotides BPHYT_RS30485: BPHYT_RS30485 - ABC transporter ATP-binding protein, at 2,399,069 to 2,400,151 _RS30485 BPHYT_RS30490: BPHYT_RS30490 - 2-haloalkanoic acid dehalogenase, at 2,400,217 to 2,400,930 _RS30490 BPHYT_RS30495: BPHYT_RS30495 - oxidoreductase, at 2,400,935 to 2,402,272 _RS30495 Position (kb) 2400 2401Strain fitness (log2 ratio) -1 0 1at 2399.648 kb on + strand, within BPHYT_RS30485at 2400.358 kb on + strand, within BPHYT_RS30490

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
2,399,648 + BPHYT_RS30485 0.53 +0.5
2,400,358 + BPHYT_RS30490 0.20 -1.3

Or see this region's nucleotide sequence