Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29595

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
2,194,155	+				+0.4
2,194,156	-				+0.8
2,194,159	-				-0.3
2,194,159	-				-0.3
2,194,296	+				+1.6
2,194,297	-				+0.5
2,194,297	-				-1.4
2,194,340	-				-0.4
2,194,407	+				+0.3
2,194,688	+				-0.7
2,194,859	+				+0.2
2,194,859	+				+2.0
2,194,860	-				+1.1
2,194,860	-				+0.6
2,194,919	+				-0.1
2,195,278	-		BPHYT_RS29595	0.11	-1.6
2,195,349	+		BPHYT_RS29595	0.16	+1.6
2,195,349	+		BPHYT_RS29595	0.16	-1.5
2,195,350	-		BPHYT_RS29595	0.16	-0.4
2,195,350	-		BPHYT_RS29595	0.16	-2.0
2,195,350	-		BPHYT_RS29595	0.16	-1.0
2,195,973	+		BPHYT_RS29595	0.62	-0.7
2,195,973	+		BPHYT_RS29595	0.62	+1.1
2,195,974	-		BPHYT_RS29595	0.62	-0.9
2,195,986	+		BPHYT_RS29595	0.63	-0.1
2,195,986	+		BPHYT_RS29595	0.63	+1.2
2,195,986	+		BPHYT_RS29595	0.63	+0.8
2,195,987	-		BPHYT_RS29595	0.63	-0.2
2,196,714	-				+0.2
2,196,834	+		BPHYT_RS29600	0.21	+1.6
2,196,834	+		BPHYT_RS29600	0.21	-0.2
2,196,911	+		BPHYT_RS29600	0.29	+0.3
2,196,911	+		BPHYT_RS29600	0.29	+1.3
2,196,912	-		BPHYT_RS29600	0.29	-0.4
2,196,912	-		BPHYT_RS29600	0.29	-1.1
2,197,116	+		BPHYT_RS29600	0.49	-0.7
2,197,119	-		BPHYT_RS29600	0.49	+1.3
2,197,187	+		BPHYT_RS29600	0.56	+0.4
2,197,187	+		BPHYT_RS29600	0.56	+1.0
2,197,188	-		BPHYT_RS29600	0.56	-1.7
2,197,188	-		BPHYT_RS29600	0.56	+0.5
2,197,346	-		BPHYT_RS29600	0.72	+0.9
2,197,371	-		BPHYT_RS29600	0.74	-0.6
2,197,371	-		BPHYT_RS29600	0.74	+0.5
2,197,371	-		BPHYT_RS29600	0.74	+0.7
2,197,375	-		BPHYT_RS29600	0.75	-0.1
2,197,376	+		BPHYT_RS29600	0.75	+0.2
2,197,376	+		BPHYT_RS29600	0.75	-0.1
2,197,377	-		BPHYT_RS29600	0.75	+0.2
2,197,377	-		BPHYT_RS29600	0.75	-0.5
2,197,403	+		BPHYT_RS29600	0.77	+1.6
2,197,403	+		BPHYT_RS29600	0.77	+3.0
2,197,404	-		BPHYT_RS29600	0.78	-0.3