Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28110

Experiment: 36hr PHYTO4 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS28095 and BPHYT_RS28100 are separated by 25 nucleotidesBPHYT_RS28100 and BPHYT_RS28105 are separated by 55 nucleotidesBPHYT_RS28105 and BPHYT_RS28110 overlap by 28 nucleotidesBPHYT_RS28110 and BPHYT_RS28115 are separated by 19 nucleotidesBPHYT_RS28115 and BPHYT_RS28120 are separated by 578 nucleotides BPHYT_RS28095: BPHYT_RS28095 - membrane protein, at 1,866,268 to 1,866,462 _RS28095 BPHYT_RS28100: BPHYT_RS28100 - hypothetical protein, at 1,866,488 to 1,866,682 _RS28100 BPHYT_RS28105: BPHYT_RS28105 - hypothetical protein, at 1,866,738 to 1,867,382 _RS28105 BPHYT_RS28110: BPHYT_RS28110 - hypothetical protein, at 1,867,355 to 1,867,555 _RS28110 BPHYT_RS28115: BPHYT_RS28115 - hypothetical protein, at 1,867,575 to 1,867,793 _RS28115 BPHYT_RS28120: BPHYT_RS28120 - hypothetical protein, at 1,868,372 to 1,868,653 _RS28120 Position (kb) 1867 1868Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1866.575 kb on - strand, within BPHYT_RS28100at 1866.591 kb on + strand, within BPHYT_RS28100at 1866.648 kb on + strand, within BPHYT_RS28100at 1866.649 kb on - strand, within BPHYT_RS28100at 1866.773 kb on - strandat 1866.811 kb on + strand, within BPHYT_RS28105at 1866.935 kb on - strand, within BPHYT_RS28105at 1867.425 kb on + strand, within BPHYT_RS28110at 1867.558 kb on - strandat 1867.558 kb on - strandat 1867.662 kb on + strand, within BPHYT_RS28115at 1867.965 kb on + strandat 1867.975 kb on + strandat 1868.352 kb on + strandat 1868.355 kb on + strandat 1868.393 kb on + strandat 1868.393 kb on + strandat 1868.394 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
remove
1,866,575 - BPHYT_RS28100 0.45 -1.3
1,866,591 + BPHYT_RS28100 0.53 +0.6
1,866,648 + BPHYT_RS28100 0.82 +0.1
1,866,649 - BPHYT_RS28100 0.83 +0.3
1,866,773 - +0.8
1,866,811 + BPHYT_RS28105 0.11 +2.1
1,866,935 - BPHYT_RS28105 0.31 +0.4
1,867,425 + BPHYT_RS28110 0.35 -1.3
1,867,558 - -2.7
1,867,558 - -0.4
1,867,662 + BPHYT_RS28115 0.40 +0.3
1,867,965 + -2.8
1,867,975 + -0.7
1,868,352 + +0.5
1,868,355 + +0.2
1,868,393 + -0.6
1,868,393 + +0.6
1,868,394 - -0.1

Or see this region's nucleotide sequence