Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27835

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27830 and BPHYT_RS27835 are separated by 352 nucleotidesBPHYT_RS27835 and BPHYT_RS27840 overlap by 1 nucleotides BPHYT_RS27830: BPHYT_RS27830 - universal stress protein A, at 1,805,580 to 1,806,533 _RS27830 BPHYT_RS27835: BPHYT_RS27835 - polysaccharide deacetylase, at 1,806,886 to 1,807,734 _RS27835 BPHYT_RS27840: BPHYT_RS27840 - GTP-binding protein, at 1,807,734 to 1,808,990 _RS27840 Position (kb) 1806 1807 1808Strain fitness (log2 ratio) -1 0 1at 1805.913 kb on + strand, within BPHYT_RS27830at 1805.920 kb on + strand, within BPHYT_RS27830at 1806.047 kb on - strand, within BPHYT_RS27830at 1806.437 kb on - strand, within BPHYT_RS27830at 1806.625 kb on + strandat 1807.280 kb on - strand, within BPHYT_RS27835at 1807.352 kb on + strand, within BPHYT_RS27835at 1807.376 kb on - strand, within BPHYT_RS27835at 1807.376 kb on - strand, within BPHYT_RS27835at 1807.564 kb on + strand, within BPHYT_RS27835at 1807.567 kb on - strand, within BPHYT_RS27835at 1807.567 kb on - strand, within BPHYT_RS27835at 1808.045 kb on - strand, within BPHYT_RS27840at 1808.045 kb on - strand, within BPHYT_RS27840at 1808.090 kb on + strand, within BPHYT_RS27840at 1808.472 kb on + strand, within BPHYT_RS27840at 1808.620 kb on - strand, within BPHYT_RS27840at 1808.705 kb on - strand, within BPHYT_RS27840at 1808.705 kb on - strand, within BPHYT_RS27840

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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1,805,913 + BPHYT_RS27830 0.35 -0.1
1,805,920 + BPHYT_RS27830 0.36 +0.1
1,806,047 - BPHYT_RS27830 0.49 -0.7
1,806,437 - BPHYT_RS27830 0.90 +0.5
1,806,625 + -1.0
1,807,280 - BPHYT_RS27835 0.46 -0.8
1,807,352 + BPHYT_RS27835 0.55 +1.1
1,807,376 - BPHYT_RS27835 0.58 +0.2
1,807,376 - BPHYT_RS27835 0.58 +0.1
1,807,564 + BPHYT_RS27835 0.80 -0.9
1,807,567 - BPHYT_RS27835 0.80 -1.4
1,807,567 - BPHYT_RS27835 0.80 -1.0
1,808,045 - BPHYT_RS27840 0.25 -0.4
1,808,045 - BPHYT_RS27840 0.25 -0.0
1,808,090 + BPHYT_RS27840 0.28 -1.3
1,808,472 + BPHYT_RS27840 0.59 -1.4
1,808,620 - BPHYT_RS27840 0.70 -0.4
1,808,705 - BPHYT_RS27840 0.77 +0.1
1,808,705 - BPHYT_RS27840 0.77 -1.5

Or see this region's nucleotide sequence