Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27820

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27815 and BPHYT_RS27820 are separated by 209 nucleotidesBPHYT_RS27820 and BPHYT_RS27825 are separated by 1 nucleotidesBPHYT_RS27825 and BPHYT_RS27830 are separated by 138 nucleotides BPHYT_RS27815: BPHYT_RS27815 - transporter, at 1,802,616 to 1,804,364 _RS27815 BPHYT_RS27820: BPHYT_RS27820 - membrane protein, at 1,804,574 to 1,805,005 _RS27820 BPHYT_RS27825: BPHYT_RS27825 - hypothetical protein, at 1,805,007 to 1,805,441 _RS27825 BPHYT_RS27830: BPHYT_RS27830 - universal stress protein A, at 1,805,580 to 1,806,533 _RS27830 Position (kb) 1804 1805 1806Strain fitness (log2 ratio) -2 -1 0 1at 1803.672 kb on - strand, within BPHYT_RS27815at 1804.327 kb on - strandat 1804.362 kb on + strandat 1804.363 kb on - strandat 1805.499 kb on + strandat 1805.500 kb on - strandat 1805.500 kb on - strandat 1805.913 kb on + strand, within BPHYT_RS27830at 1805.920 kb on + strand, within BPHYT_RS27830

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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1,803,672 - BPHYT_RS27815 0.60 +1.7
1,804,327 - +1.1
1,804,362 + +0.7
1,804,363 - -1.0
1,805,499 + -2.4
1,805,500 - -1.3
1,805,500 - -2.2
1,805,913 + BPHYT_RS27830 0.35 -0.1
1,805,920 + BPHYT_RS27830 0.36 +0.1

Or see this region's nucleotide sequence