Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26115

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26105 and BPHYT_RS26110 overlap by 10 nucleotidesBPHYT_RS26110 and BPHYT_RS26115 overlap by 4 nucleotidesBPHYT_RS26115 and BPHYT_RS26120 are separated by 315 nucleotides BPHYT_RS26105: BPHYT_RS26105 - hypothetical protein, at 1,432,780 to 1,433,370 _RS26105 BPHYT_RS26110: BPHYT_RS26110 - GntR family transcriptional regulator, at 1,433,361 to 1,434,113 _RS26110 BPHYT_RS26115: BPHYT_RS26115 - polysaccharide deacetylase, at 1,434,110 to 1,435,075 _RS26115 BPHYT_RS26120: BPHYT_RS26120 - spermidine/putrescine ABC transporter ATPase, at 1,435,391 to 1,436,449 _RS26120 Position (kb) 1434 1435 1436Strain fitness (log2 ratio) -3 -2 -1 0 1at 1433.331 kb on - strandat 1433.629 kb on + strand, within BPHYT_RS26110at 1434.157 kb on + strandat 1434.274 kb on - strand, within BPHYT_RS26115at 1434.388 kb on + strand, within BPHYT_RS26115at 1434.835 kb on - strand, within BPHYT_RS26115at 1435.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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1,433,331 - -2.2
1,433,629 + BPHYT_RS26110 0.36 +0.5
1,434,157 + -0.3
1,434,274 - BPHYT_RS26115 0.17 -2.5
1,434,388 + BPHYT_RS26115 0.29 +1.0
1,434,835 - BPHYT_RS26115 0.75 -3.0
1,435,065 - -2.1

Or see this region's nucleotide sequence