Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24555

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
1,078,106	+				-0.1
1,078,107	-				-0.4
1,078,107	-				+0.0
1,078,294	+				-0.0
1,078,294	+				-0.3
1,078,295	-				-0.1
1,078,513	-		BPHYT_RS24550	0.48	+2.0
1,078,513	-		BPHYT_RS24550	0.48	+0.9
1,078,513	-		BPHYT_RS24550	0.48	+0.5
1,078,558	-		BPHYT_RS24550	0.64	+0.6
1,078,674	+				+0.2
1,078,674	+				+1.1
1,078,675	-				-0.9
1,078,675	-				-1.2
1,078,675	-				-1.7
1,078,696	-				+2.6
1,078,696	-				-0.8
1,078,751	+				+0.8
1,078,813	+				-0.4
1,078,813	+				-0.1
1,078,814	-				+0.7
1,078,857	+				-0.8
1,078,858	-				+1.4
1,078,858	-				-1.1
1,078,858	-				-0.1
1,078,906	+				+0.2
1,078,946	+				+0.5
1,078,947	-				-0.2
1,079,023	+				+0.2
1,079,023	+				+0.0
1,079,024	-				-2.1
1,079,122	-				-0.1
1,079,206	+		BPHYT_RS24555	0.16	-0.0
1,080,114	+				-0.1
1,080,115	-				-0.8
1,080,275	+		BPHYT_RS24560	0.13	+0.4
1,080,275	+		BPHYT_RS24560	0.13	+0.1
1,080,332	+		BPHYT_RS24560	0.19	+0.9
1,080,332	+		BPHYT_RS24560	0.19	-0.1
1,080,333	-		BPHYT_RS24560	0.19	-0.4
1,080,333	-		BPHYT_RS24560	0.19	-1.4
1,080,418	+		BPHYT_RS24560	0.29	+5.3
1,080,418	+		BPHYT_RS24560	0.29	+2.2
1,080,419	-		BPHYT_RS24560	0.29	-0.0
1,080,440	-		BPHYT_RS24560	0.31	-0.6
1,080,459	-		BPHYT_RS24560	0.33	+1.5
1,080,730	+		BPHYT_RS24560	0.64	+0.3
1,080,731	-		BPHYT_RS24560	0.64	-0.2
1,080,868	+		BPHYT_RS24560	0.80	-0.1
1,080,868	+		BPHYT_RS24560	0.80	+0.1
1,080,869	-		BPHYT_RS24560	0.80	+0.9
1,080,926	-		BPHYT_RS24560	0.86	+1.6
1,081,035	+				-0.0
1,081,036	-				+0.8
1,081,036	-				-0.2
1,081,058	-				+1.6
1,081,095	+				-1.4
1,081,096	-				+1.0