Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24110

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24105 and BPHYT_RS24110 are separated by 110 nucleotidesBPHYT_RS24110 and BPHYT_RS24115 are separated by 395 nucleotides BPHYT_RS24105: BPHYT_RS24105 - chloroperoxidase, at 974,598 to 975,419 _RS24105 BPHYT_RS24110: BPHYT_RS24110 - hypothetical protein, at 975,530 to 976,072 _RS24110 BPHYT_RS24115: BPHYT_RS24115 - epimerase, at 976,468 to 977,304 _RS24115 Position (kb) 975 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 974.582 kb on + strandat 974.582 kb on + strandat 974.582 kb on + strandat 974.814 kb on + strand, within BPHYT_RS24105at 975.177 kb on + strand, within BPHYT_RS24105at 975.616 kb on - strand, within BPHYT_RS24110at 975.666 kb on + strand, within BPHYT_RS24110at 975.966 kb on - strand, within BPHYT_RS24110at 975.978 kb on + strand, within BPHYT_RS24110at 976.088 kb on + strandat 976.089 kb on - strandat 976.232 kb on - strandat 976.326 kb on + strandat 976.505 kb on + strandat 976.505 kb on + strandat 976.586 kb on + strand, within BPHYT_RS24115at 977.058 kb on - strand, within BPHYT_RS24115

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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974,582 + +0.2
974,582 + +2.0
974,582 + -0.4
974,814 + BPHYT_RS24105 0.26 -0.4
975,177 + BPHYT_RS24105 0.70 -0.4
975,616 - BPHYT_RS24110 0.16 -0.6
975,666 + BPHYT_RS24110 0.25 -1.5
975,966 - BPHYT_RS24110 0.80 -0.8
975,978 + BPHYT_RS24110 0.83 +2.6
976,088 + +0.6
976,089 - -2.3
976,232 - +0.0
976,326 + -1.2
976,505 + +1.3
976,505 + +0.3
976,586 + BPHYT_RS24115 0.14 -0.2
977,058 - BPHYT_RS24115 0.70 -0.9

Or see this region's nucleotide sequence