Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24095 and BPHYT_RS24100 are separated by 207 nucleotides BPHYT_RS24100 and BPHYT_RS24105 are separated by 298 nucleotides BPHYT_RS24105 and BPHYT_RS24110 are separated by 110 nucleotides
BPHYT_RS24095: BPHYT_RS24095 - membrane protein, at 972,419 to 973,831
_RS24095
BPHYT_RS24100: BPHYT_RS24100 - hypothetical protein, at 974,039 to 974,299
_RS24100
BPHYT_RS24105: BPHYT_RS24105 - chloroperoxidase, at 974,598 to 975,419
_RS24105
BPHYT_RS24110: BPHYT_RS24110 - hypothetical protein, at 975,530 to 976,072
_RS24110
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1
2 at 973.680 kb on + strand, within BPHYT_RS24095 at 973.681 kb on - strand, within BPHYT_RS24095 at 973.683 kb on + strand, within BPHYT_RS24095 at 973.684 kb on - strand, within BPHYT_RS24095 at 974.298 kb on - strand at 974.314 kb on - strand at 974.394 kb on - strand at 974.582 kb on + strand at 974.582 kb on + strand at 974.582 kb on + strand at 974.814 kb on + strand, within BPHYT_RS24105 at 975.177 kb on + strand, within BPHYT_RS24105 at 975.616 kb on - strand, within BPHYT_RS24110 at 975.666 kb on + strand, within BPHYT_RS24110 at 975.966 kb on - strand, within BPHYT_RS24110 at 975.978 kb on + strand, within BPHYT_RS24110 at 976.088 kb on + strand at 976.089 kb on - strand at 976.232 kb on - strand at 976.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 973,680 + BPHYT_RS24095 0.89 +1.1 973,681 - BPHYT_RS24095 0.89 -0.1 973,683 + BPHYT_RS24095 0.89 +1.6 973,684 - BPHYT_RS24095 0.90 +1.1 974,298 - -0.3 974,314 - +0.0 974,394 - -0.6 974,582 + +0.2 974,582 + +2.0 974,582 + -0.4 974,814 + BPHYT_RS24105 0.26 -0.4 975,177 + BPHYT_RS24105 0.70 -0.4 975,616 - BPHYT_RS24110 0.16 -0.6 975,666 + BPHYT_RS24110 0.25 -1.5 975,966 - BPHYT_RS24110 0.80 -0.8 975,978 + BPHYT_RS24110 0.83 +2.6 976,088 + +0.6 976,089 - -2.3 976,232 - +0.0 976,326 + -1.2
Or see this region's nucleotide sequence