Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22750
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
660,488 | + | BPHYT_RS22745 | 0.55 | +3.9 | |
660,872 | - | +0.6 | |||
661,274 | + | +0.3 | |||
661,275 | - | +0.2 | |||
661,306 | - | -0.5 | |||
661,726 | + | BPHYT_RS22750 | 0.44 | -1.1 | |
661,778 | - | BPHYT_RS22750 | 0.50 | -2.1 | |
662,169 | - | -1.5 | |||
662,169 | - | +1.0 | |||
662,256 | - | -0.5 | |||
662,256 | - | +1.6 | |||
662,403 | + | +0.7 | |||
662,514 | - | -0.2 | |||
662,540 | - | BPHYT_RS22755 | 0.12 | +1.5 | |
662,540 | - | BPHYT_RS22755 | 0.12 | +0.0 |
Or see this region's nucleotide sequence