Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21300 and BPHYT_RS21305 are separated by 139 nucleotides BPHYT_RS21305 and BPHYT_RS21310 are separated by 165 nucleotides BPHYT_RS21310 and BPHYT_RS21315 are separated by 628 nucleotides
BPHYT_RS21300: BPHYT_RS21300 - membrane protein, at 338,297 to 338,812
_RS21300
BPHYT_RS21305: BPHYT_RS21305 - hypothetical protein, at 338,952 to 339,455
_RS21305
BPHYT_RS21310: BPHYT_RS21310 - porin, at 339,621 to 340,772
_RS21310
BPHYT_RS21315: BPHYT_RS21315 - hypothetical protein, at 341,401 to 341,937
_RS21315
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.855 kb on + strand at 339.074 kb on - strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.172 kb on + strand, within BPHYT_RS21305 at 339.173 kb on - strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.201 kb on + strand, within BPHYT_RS21305 at 339.371 kb on - strand, within BPHYT_RS21305 at 339.467 kb on - strand at 339.525 kb on + strand at 339.606 kb on - strand at 339.623 kb on - strand at 339.742 kb on + strand, within BPHYT_RS21310 at 339.742 kb on + strand, within BPHYT_RS21310 at 339.743 kb on - strand, within BPHYT_RS21310 at 339.757 kb on + strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.784 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.865 kb on + strand, within BPHYT_RS21310 at 339.919 kb on + strand, within BPHYT_RS21310 at 339.920 kb on - strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.010 kb on + strand, within BPHYT_RS21310 at 340.011 kb on - strand, within BPHYT_RS21310 at 340.039 kb on + strand, within BPHYT_RS21310 at 340.040 kb on - strand, within BPHYT_RS21310 at 340.045 kb on + strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.046 kb on - strand, within BPHYT_RS21310 at 340.063 kb on + strand, within BPHYT_RS21310 at 340.192 kb on + strand, within BPHYT_RS21310 at 340.255 kb on + strand, within BPHYT_RS21310 at 340.255 kb on + strand, within BPHYT_RS21310 at 340.282 kb on + strand, within BPHYT_RS21310 at 340.283 kb on - strand, within BPHYT_RS21310 at 340.297 kb on + strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.298 kb on - strand, within BPHYT_RS21310 at 340.409 kb on - strand, within BPHYT_RS21310 at 340.427 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310 at 340.454 kb on - strand, within BPHYT_RS21310 at 340.603 kb on + strand, within BPHYT_RS21310 at 340.603 kb on + strand, within BPHYT_RS21310 at 340.604 kb on - strand, within BPHYT_RS21310 at 340.604 kb on - strand, within BPHYT_RS21310 at 340.693 kb on + strand at 340.693 kb on + strand at 340.694 kb on - strand at 340.694 kb on - strand at 340.781 kb on - strand at 340.812 kb on - strand at 340.978 kb on + strand at 341.052 kb on - strand at 341.127 kb on + strand at 341.245 kb on + strand at 341.245 kb on + strand at 341.245 kb on + strand at 341.727 kb on + strand, within BPHYT_RS21315
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 338,855 + +0.2 339,074 - BPHYT_RS21305 0.24 +0.2 339,131 + BPHYT_RS21305 0.36 +0.6 339,131 + BPHYT_RS21305 0.36 -1.3 339,131 + BPHYT_RS21305 0.36 -0.2 339,172 + BPHYT_RS21305 0.44 +0.4 339,173 - BPHYT_RS21305 0.44 -0.1 339,199 + BPHYT_RS21305 0.49 +0.6 339,199 + BPHYT_RS21305 0.49 -1.5 339,200 - BPHYT_RS21305 0.49 +0.1 339,200 - BPHYT_RS21305 0.49 -0.5 339,200 - BPHYT_RS21305 0.49 -1.3 339,200 - BPHYT_RS21305 0.49 -1.0 339,200 - BPHYT_RS21305 0.49 -0.8 339,200 - BPHYT_RS21305 0.49 +0.5 339,201 + BPHYT_RS21305 0.49 -1.2 339,371 - BPHYT_RS21305 0.83 -0.3 339,467 - +0.3 339,525 + -0.4 339,606 - +2.1 339,623 - +0.3 339,742 + BPHYT_RS21310 0.11 +0.5 339,742 + BPHYT_RS21310 0.11 +1.7 339,743 - BPHYT_RS21310 0.11 -0.9 339,757 + BPHYT_RS21310 0.12 +0.1 339,758 - BPHYT_RS21310 0.12 +0.9 339,758 - BPHYT_RS21310 0.12 -1.4 339,758 - BPHYT_RS21310 0.12 -0.4 339,758 - BPHYT_RS21310 0.12 -0.1 339,784 + BPHYT_RS21310 0.14 -1.7 339,865 + BPHYT_RS21310 0.21 -1.4 339,865 + BPHYT_RS21310 0.21 +0.5 339,865 + BPHYT_RS21310 0.21 -0.6 339,919 + BPHYT_RS21310 0.26 +0.7 339,920 - BPHYT_RS21310 0.26 -0.2 340,010 + BPHYT_RS21310 0.34 +0.1 340,010 + BPHYT_RS21310 0.34 +0.3 340,010 + BPHYT_RS21310 0.34 +0.9 340,011 - BPHYT_RS21310 0.34 -0.2 340,039 + BPHYT_RS21310 0.36 -1.0 340,040 - BPHYT_RS21310 0.36 +0.7 340,045 + BPHYT_RS21310 0.37 +1.7 340,046 - BPHYT_RS21310 0.37 -0.2 340,046 - BPHYT_RS21310 0.37 -1.4 340,046 - BPHYT_RS21310 0.37 +2.7 340,063 + BPHYT_RS21310 0.38 -2.0 340,192 + BPHYT_RS21310 0.50 +0.5 340,255 + BPHYT_RS21310 0.55 +1.5 340,255 + BPHYT_RS21310 0.55 -1.4 340,282 + BPHYT_RS21310 0.57 +0.4 340,283 - BPHYT_RS21310 0.57 -0.6 340,297 + BPHYT_RS21310 0.59 +0.7 340,298 - BPHYT_RS21310 0.59 +0.3 340,298 - BPHYT_RS21310 0.59 +0.2 340,298 - BPHYT_RS21310 0.59 -0.4 340,409 - BPHYT_RS21310 0.68 -0.4 340,427 - BPHYT_RS21310 0.70 +1.3 340,454 - BPHYT_RS21310 0.72 +0.1 340,454 - BPHYT_RS21310 0.72 -1.3 340,603 + BPHYT_RS21310 0.85 +0.6 340,603 + BPHYT_RS21310 0.85 -1.0 340,604 - BPHYT_RS21310 0.85 +0.6 340,604 - BPHYT_RS21310 0.85 -2.5 340,693 + +0.2 340,693 + -0.9 340,694 - +1.3 340,694 - +0.3 340,781 - -0.8 340,812 - -0.2 340,978 + +0.1 341,052 - -0.8 341,127 + +1.0 341,245 + -0.7 341,245 + +0.1 341,245 + -0.6 341,727 + BPHYT_RS21315 0.61 +1.9
Or see this region's nucleotide sequence