Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21295 and BPHYT_RS21300 are separated by 45 nucleotides BPHYT_RS21300 and BPHYT_RS21305 are separated by 139 nucleotides BPHYT_RS21305 and BPHYT_RS21310 are separated by 165 nucleotides
BPHYT_RS21295: BPHYT_RS21295 - AraC family transcriptional regulator, at 337,430 to 338,251
_RS21295
BPHYT_RS21300: BPHYT_RS21300 - membrane protein, at 338,297 to 338,812
_RS21300
BPHYT_RS21305: BPHYT_RS21305 - hypothetical protein, at 338,952 to 339,455
_RS21305
BPHYT_RS21310: BPHYT_RS21310 - porin, at 339,621 to 340,772
_RS21310
Position (kb) 338
339 Strain fitness (log2 ratio) -1
0
1
2 at 337.402 kb on - strand at 337.685 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.084 kb on + strand, within BPHYT_RS21295 at 338.085 kb on - strand, within BPHYT_RS21295 at 338.232 kb on - strand at 338.420 kb on - strand, within BPHYT_RS21300 at 338.466 kb on - strand, within BPHYT_RS21300 at 338.536 kb on - strand, within BPHYT_RS21300 at 338.855 kb on + strand at 339.074 kb on - strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.131 kb on + strand, within BPHYT_RS21305 at 339.172 kb on + strand, within BPHYT_RS21305 at 339.173 kb on - strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.199 kb on + strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.200 kb on - strand, within BPHYT_RS21305 at 339.201 kb on + strand, within BPHYT_RS21305 at 339.371 kb on - strand, within BPHYT_RS21305 at 339.467 kb on - strand at 339.525 kb on + strand at 339.606 kb on - strand at 339.623 kb on - strand at 339.742 kb on + strand, within BPHYT_RS21310 at 339.742 kb on + strand, within BPHYT_RS21310 at 339.743 kb on - strand, within BPHYT_RS21310 at 339.757 kb on + strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.758 kb on - strand, within BPHYT_RS21310 at 339.784 kb on + strand, within BPHYT_RS21310
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 337,402 - -0.6 337,685 + BPHYT_RS21295 0.31 -1.7 338,084 + BPHYT_RS21295 0.80 -0.5 338,084 + BPHYT_RS21295 0.80 -0.7 338,085 - BPHYT_RS21295 0.80 -0.5 338,232 - +0.8 338,420 - BPHYT_RS21300 0.24 -0.3 338,466 - BPHYT_RS21300 0.33 -1.3 338,536 - BPHYT_RS21300 0.46 -1.2 338,855 + +0.2 339,074 - BPHYT_RS21305 0.24 +0.2 339,131 + BPHYT_RS21305 0.36 +0.6 339,131 + BPHYT_RS21305 0.36 -1.3 339,131 + BPHYT_RS21305 0.36 -0.2 339,172 + BPHYT_RS21305 0.44 +0.4 339,173 - BPHYT_RS21305 0.44 -0.1 339,199 + BPHYT_RS21305 0.49 +0.6 339,199 + BPHYT_RS21305 0.49 -1.5 339,200 - BPHYT_RS21305 0.49 +0.1 339,200 - BPHYT_RS21305 0.49 -0.5 339,200 - BPHYT_RS21305 0.49 -1.3 339,200 - BPHYT_RS21305 0.49 -1.0 339,200 - BPHYT_RS21305 0.49 -0.8 339,200 - BPHYT_RS21305 0.49 +0.5 339,201 + BPHYT_RS21305 0.49 -1.2 339,371 - BPHYT_RS21305 0.83 -0.3 339,467 - +0.3 339,525 + -0.4 339,606 - +2.1 339,623 - +0.3 339,742 + BPHYT_RS21310 0.11 +0.5 339,742 + BPHYT_RS21310 0.11 +1.7 339,743 - BPHYT_RS21310 0.11 -0.9 339,757 + BPHYT_RS21310 0.12 +0.1 339,758 - BPHYT_RS21310 0.12 +0.9 339,758 - BPHYT_RS21310 0.12 -1.4 339,758 - BPHYT_RS21310 0.12 -0.4 339,758 - BPHYT_RS21310 0.12 -0.1 339,784 + BPHYT_RS21310 0.14 -1.7
Or see this region's nucleotide sequence