Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21070
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
287,474 | - | -0.9 | |||
288,031 | + | BPHYT_RS21065 | 0.82 | +0.3 | |
288,415 | + | -0.7 | |||
288,602 | - | BPHYT_RS21070 | 0.48 | -1.5 | |
288,703 | + | BPHYT_RS21070 | 0.59 | -1.1 | |
289,086 | + | +0.8 | |||
289,089 | - | +1.1 | |||
289,545 | + | BPHYT_RS21075 | 0.33 | +1.5 | |
289,903 | - | BPHYT_RS21075 | 0.67 | +1.0 | |
289,963 | - | BPHYT_RS21075 | 0.73 | +0.7 |
Or see this region's nucleotide sequence