Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20675

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20670 and BPHYT_RS20675 are separated by 30 nucleotidesBPHYT_RS20675 and BPHYT_RS20680 are separated by 191 nucleotides BPHYT_RS20670: BPHYT_RS20670 - carbon-nitrogen hydrolase, at 197,623 to 198,579 _RS20670 BPHYT_RS20675: BPHYT_RS20675 - LysR family transcriptional regulator, at 198,610 to 199,482 _RS20675 BPHYT_RS20680: BPHYT_RS20680 - LacI family transcriptional regulator, at 199,674 to 200,639 _RS20680 Position (kb) 198 199 200Strain fitness (log2 ratio) -2 -1 0 1 2at 197.785 kb on + strand, within BPHYT_RS20670at 198.094 kb on + strand, within BPHYT_RS20670at 198.094 kb on + strand, within BPHYT_RS20670at 198.290 kb on + strand, within BPHYT_RS20670at 198.290 kb on + strand, within BPHYT_RS20670at 198.348 kb on - strand, within BPHYT_RS20670at 198.457 kb on + strand, within BPHYT_RS20670at 198.464 kb on + strand, within BPHYT_RS20670at 198.555 kb on + strandat 198.962 kb on + strand, within BPHYT_RS20675at 198.962 kb on + strand, within BPHYT_RS20675at 199.016 kb on + strand, within BPHYT_RS20675at 199.016 kb on + strand, within BPHYT_RS20675at 199.082 kb on + strand, within BPHYT_RS20675at 199.163 kb on + strand, within BPHYT_RS20675at 199.241 kb on - strand, within BPHYT_RS20675at 199.537 kb on - strandat 200.195 kb on + strand, within BPHYT_RS20680

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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197,785 + BPHYT_RS20670 0.17 +0.8
198,094 + BPHYT_RS20670 0.49 +2.0
198,094 + BPHYT_RS20670 0.49 -0.3
198,290 + BPHYT_RS20670 0.70 -0.3
198,290 + BPHYT_RS20670 0.70 +0.7
198,348 - BPHYT_RS20670 0.76 +2.7
198,457 + BPHYT_RS20670 0.87 -0.2
198,464 + BPHYT_RS20670 0.88 -0.5
198,555 + +0.5
198,962 + BPHYT_RS20675 0.40 -0.1
198,962 + BPHYT_RS20675 0.40 +0.1
199,016 + BPHYT_RS20675 0.47 -0.7
199,016 + BPHYT_RS20675 0.47 -0.7
199,082 + BPHYT_RS20675 0.54 -1.1
199,163 + BPHYT_RS20675 0.63 +0.7
199,241 - BPHYT_RS20675 0.72 +0.5
199,537 - -2.3
200,195 + BPHYT_RS20680 0.54 -0.8

Or see this region's nucleotide sequence