Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20470

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20465 and BPHYT_RS20470 are separated by 55 nucleotidesBPHYT_RS20470 and BPHYT_RS20475 are separated by 32 nucleotides BPHYT_RS20465: BPHYT_RS20465 - LysR family transcriptional regulator, at 153,559 to 154,443 _RS20465 BPHYT_RS20470: BPHYT_RS20470 - hypothetical protein, at 154,499 to 155,131 _RS20470 BPHYT_RS20475: BPHYT_RS20475 - hypothetical protein, at 155,164 to 156,384 _RS20475 Position (kb) 154 155 156Strain fitness (log2 ratio) -1 0 1at 153.970 kb on + strand, within BPHYT_RS20465at 154.073 kb on + strand, within BPHYT_RS20465at 154.361 kb on - strandat 154.551 kb on + strandat 154.552 kb on - strandat 154.552 kb on - strandat 154.907 kb on - strand, within BPHYT_RS20470at 155.192 kb on - strandat 155.524 kb on + strand, within BPHYT_RS20475at 155.974 kb on - strand, within BPHYT_RS20475

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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153,970 + BPHYT_RS20465 0.46 -0.3
154,073 + BPHYT_RS20465 0.58 -1.1
154,361 - -1.0
154,551 + -1.7
154,552 - +0.1
154,552 - -0.3
154,907 - BPHYT_RS20470 0.64 +0.8
155,192 - +1.7
155,524 + BPHYT_RS20475 0.29 -1.2
155,974 - BPHYT_RS20475 0.66 -0.7

Or see this region's nucleotide sequence