Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15610

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,539,849	+		BPHYT_RS15605	0.27	-1.7
3,539,849	+		BPHYT_RS15605	0.27	+0.1
3,539,849	+		BPHYT_RS15605	0.27	-1.3
3,539,849	+		BPHYT_RS15605	0.27	+0.0
3,539,849	+		BPHYT_RS15605	0.27	-0.8
3,539,849	+		BPHYT_RS15605	0.27	+1.0
3,539,849	+		BPHYT_RS15605	0.27	-1.6
3,539,849	+		BPHYT_RS15605	0.27	+1.1
3,539,850	-		BPHYT_RS15605	0.27	-0.9
3,539,850	-		BPHYT_RS15605	0.27	-1.1
3,539,850	-		BPHYT_RS15605	0.27	-0.9
3,539,867	+		BPHYT_RS15605	0.28	-0.7
3,540,290	+		BPHYT_RS15605	0.73	+0.8
3,540,291	-		BPHYT_RS15605	0.73	+0.8
3,540,385	+		BPHYT_RS15605	0.83	-2.0
3,540,471	+				+0.7
3,540,471	+				-2.0
3,540,472	-				-0.4
3,540,472	-				+0.5
3,540,472	-				-0.7
3,540,495	-				-0.2
3,540,540	+				-0.9
3,540,541	-				-0.9
3,540,548	+				-0.9
3,540,548	+				-0.4
3,540,549	-				+0.4
3,540,549	-				-1.1
3,540,549	-				-0.4
3,540,549	-				-0.8
3,540,549	-				-1.4
3,540,549	-				-1.4
3,540,558	+				-1.6
3,540,646	-				-1.7
3,540,827	-				+2.2
3,540,896	-				-2.2
3,540,896	-				-0.9
3,540,896	-				+0.2
3,540,973	+		BPHYT_RS15610	0.16	-0.7
3,540,974	-		BPHYT_RS15610	0.16	+0.1
3,541,033	+		BPHYT_RS15610	0.21	-2.7
3,541,034	-		BPHYT_RS15610	0.21	-0.3
3,541,272	-				+0.2
3,541,344	+		BPHYT_RS15610	0.47	-1.3
3,541,345	-		BPHYT_RS15610	0.47	+0.1
3,541,345	-		BPHYT_RS15610	0.47	+0.5
3,541,438	+		BPHYT_RS15610	0.55	+1.8
3,541,439	-		BPHYT_RS15610	0.55	-1.3
3,541,439	-		BPHYT_RS15610	0.55	+0.5
3,541,487	-		BPHYT_RS15610	0.59	+0.8
3,541,513	+		BPHYT_RS15610	0.61	-1.2
3,541,562	+		BPHYT_RS15610	0.65	+1.9
3,541,562	+		BPHYT_RS15610	0.65	-0.9
3,541,562	+		BPHYT_RS15610	0.65	-2.0
3,541,562	+		BPHYT_RS15610	0.65	-3.2
3,541,562	+		BPHYT_RS15610	0.65	-1.0
3,541,562	+		BPHYT_RS15610	0.65	+1.4
3,541,562	+		BPHYT_RS15610	0.65	-0.7
3,541,562	+		BPHYT_RS15610	0.65	-0.2
3,541,563	-		BPHYT_RS15610	0.66	+1.9
3,541,563	-		BPHYT_RS15610	0.66	-0.3
3,541,563	-		BPHYT_RS15610	0.66	-1.3
3,541,564	+		BPHYT_RS15610	0.66	-1.8
3,541,564	+		BPHYT_RS15610	0.66	-0.9
3,541,564	+		BPHYT_RS15610	0.66	-1.1
3,541,564	+		BPHYT_RS15610	0.66	-0.4
3,541,565	-		BPHYT_RS15610	0.66	+1.7
3,541,565	-		BPHYT_RS15610	0.66	-0.9
3,541,565	-		BPHYT_RS15610	0.66	-0.0
3,541,565	-		BPHYT_RS15610	0.66	+0.7
3,541,565	-		BPHYT_RS15610	0.66	+0.9
3,541,565	-		BPHYT_RS15610	0.66	-0.7
3,541,565	-		BPHYT_RS15610	0.66	-1.2
3,541,566	+		BPHYT_RS15610	0.66	-0.6
3,541,566	+		BPHYT_RS15610	0.66	-1.8
3,541,566	+		BPHYT_RS15610	0.66	+0.4
3,541,567	-		BPHYT_RS15610	0.66	-0.8
3,541,567	-				+0.5
3,541,567	-		BPHYT_RS15610	0.66	-0.4
3,541,977	+				+0.6
3,541,978	-				-0.7
3,541,978	-				-1.7
3,541,981	+				-0.4
3,541,982	-				+0.4
3,542,007	-				+0.9
3,542,022	-				+1.6
3,542,070	+				+1.1
3,542,070	+				-0.1
3,542,070	+				-1.6
3,542,071	-				+0.4
3,542,251	+				+0.3
3,542,252	-				+0.4
3,542,255	-				+0.2
3,542,291	-				-1.9
3,542,291	-				-1.1
3,542,319	+				-0.9
3,542,350	+				-0.0
3,542,350	+				-0.1
3,542,350	+				-1.6
3,542,350	+				-0.8
3,542,350	+				-0.0
3,542,356	+				-0.0
3,542,356	+				-0.1
3,542,409	+				-0.7
3,542,409	+				-1.5
3,542,410	-				-0.2
3,542,728	+		BPHYT_RS15615	0.22	+0.2
3,542,864	-		BPHYT_RS15615	0.36	+2.5