Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15575 and BPHYT_RS15580 are separated by 360 nucleotides BPHYT_RS15580 and BPHYT_RS15585 are separated by 18 nucleotides BPHYT_RS15585 and BPHYT_RS15590 are separated by 82 nucleotides
BPHYT_RS15575: BPHYT_RS15575 - CDP-6-deoxy-delta-3,4-glucoseen reductase, at 3,533,750 to 3,534,781
_RS15575
BPHYT_RS15580: BPHYT_RS15580 - acetylornithine aminotransferase, at 3,535,142 to 3,536,326
_RS15580
BPHYT_RS15585: BPHYT_RS15585 - acetyltransferase, at 3,536,345 to 3,536,815
_RS15585
BPHYT_RS15590: BPHYT_RS15590 - amino acid ABC transporter ATPase, at 3,536,898 to 3,537,614
_RS15590
Position (kb)
3535
3536
3537 Strain fitness (log2 ratio)
-1
0
1
2 at 3534.143 kb on + strand, within BPHYT_RS15575 at 3534.197 kb on + strand, within BPHYT_RS15575 at 3534.289 kb on + strand, within BPHYT_RS15575 at 3534.491 kb on + strand, within BPHYT_RS15575 at 3534.491 kb on + strand, within BPHYT_RS15575 at 3534.492 kb on - strand, within BPHYT_RS15575 at 3534.644 kb on + strand, within BPHYT_RS15575 at 3534.653 kb on + strand, within BPHYT_RS15575 at 3534.653 kb on + strand, within BPHYT_RS15575 at 3534.653 kb on + strand, within BPHYT_RS15575 at 3534.654 kb on - strand, within BPHYT_RS15575 at 3534.734 kb on + strand at 3534.735 kb on - strand at 3534.735 kb on - strand at 3534.824 kb on - strand at 3534.828 kb on - strand at 3535.178 kb on + strand at 3535.367 kb on + strand, within BPHYT_RS15580 at 3535.368 kb on - strand, within BPHYT_RS15580 at 3535.411 kb on + strand, within BPHYT_RS15580 at 3535.411 kb on + strand, within BPHYT_RS15580 at 3535.411 kb on + strand, within BPHYT_RS15580 at 3535.412 kb on - strand, within BPHYT_RS15580 at 3535.601 kb on + strand, within BPHYT_RS15580 at 3535.601 kb on + strand, within BPHYT_RS15580 at 3535.602 kb on - strand, within BPHYT_RS15580 at 3535.970 kb on + strand, within BPHYT_RS15580 at 3535.970 kb on + strand, within BPHYT_RS15580 at 3536.324 kb on + strand at 3536.325 kb on - strand at 3536.345 kb on - strand at 3536.586 kb on - strand, within BPHYT_RS15585 at 3536.662 kb on - strand, within BPHYT_RS15585 at 3536.662 kb on - strand, within BPHYT_RS15585 at 3536.900 kb on - strand at 3536.900 kb on - strand at 3536.911 kb on + strand at 3536.911 kb on + strand at 3536.990 kb on - strand, within BPHYT_RS15590 at 3537.298 kb on + strand, within BPHYT_RS15590 at 3537.298 kb on + strand, within BPHYT_RS15590
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 3,534,143 + BPHYT_RS15575 0.38 -0.4 3,534,197 + BPHYT_RS15575 0.43 -0.3 3,534,289 + BPHYT_RS15575 0.52 -1.2 3,534,491 + BPHYT_RS15575 0.72 -0.1 3,534,491 + BPHYT_RS15575 0.72 +1.1 3,534,492 - BPHYT_RS15575 0.72 +0.3 3,534,644 + BPHYT_RS15575 0.87 -1.1 3,534,653 + BPHYT_RS15575 0.88 +0.6 3,534,653 + BPHYT_RS15575 0.88 +0.2 3,534,653 + BPHYT_RS15575 0.88 +0.6 3,534,654 - BPHYT_RS15575 0.88 -1.2 3,534,734 + +0.7 3,534,735 - -0.9 3,534,735 - +0.5 3,534,824 - -1.3 3,534,828 - -1.2 3,535,178 + +0.0 3,535,367 + BPHYT_RS15580 0.19 +0.5 3,535,368 - BPHYT_RS15580 0.19 +0.6 3,535,411 + BPHYT_RS15580 0.23 +2.5 3,535,411 + BPHYT_RS15580 0.23 +0.6 3,535,411 + BPHYT_RS15580 0.23 -1.0 3,535,412 - BPHYT_RS15580 0.23 -1.7 3,535,601 + BPHYT_RS15580 0.39 +0.6 3,535,601 + BPHYT_RS15580 0.39 -0.0 3,535,602 - BPHYT_RS15580 0.39 +0.2 3,535,970 + BPHYT_RS15580 0.70 +0.0 3,535,970 + BPHYT_RS15580 0.70 -0.7 3,536,324 + +0.2 3,536,325 - -1.5 3,536,345 - +0.0 3,536,586 - BPHYT_RS15585 0.51 +0.6 3,536,662 - BPHYT_RS15585 0.67 -0.5 3,536,662 - BPHYT_RS15585 0.67 +0.1 3,536,900 - +0.0 3,536,900 - -0.5 3,536,911 + -1.0 3,536,911 + -0.9 3,536,990 - BPHYT_RS15590 0.13 +1.0 3,537,298 + BPHYT_RS15590 0.56 -0.7 3,537,298 + BPHYT_RS15590 0.56 +1.5
Or see this region's nucleotide sequence