Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15100

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,436,154	+		BPHYT_RS15095	0.17	-1.7
3,436,154	+		BPHYT_RS15095	0.17	-0.3
3,436,155	-		BPHYT_RS15095	0.17	-0.8
3,436,191	-		BPHYT_RS15095	0.20	-1.2
3,436,191	-				+1.3
3,436,193	+		BPHYT_RS15095	0.20	-0.2
3,436,193	+		BPHYT_RS15095	0.20	-0.5
3,436,250	+		BPHYT_RS15095	0.26	+0.9
3,436,251	-		BPHYT_RS15095	0.26	-1.0
3,436,428	+		BPHYT_RS15095	0.43	+0.2
3,436,428	+		BPHYT_RS15095	0.43	+1.2
3,436,485	-		BPHYT_RS15095	0.48	-1.1
3,436,625	+		BPHYT_RS15095	0.61	-0.5
3,436,865	+		BPHYT_RS15095	0.84	-1.6
3,436,880	+		BPHYT_RS15095	0.85	+2.4
3,436,925	+		BPHYT_RS15095	0.90	+0.0
3,437,306	+		BPHYT_RS15100	0.12	+0.2
3,437,307	-		BPHYT_RS15100	0.12	-0.9
3,437,307	-		BPHYT_RS15100	0.12	-0.1
3,437,307	-		BPHYT_RS15100	0.12	-0.3
3,437,462	+		BPHYT_RS15100	0.24	+0.7
3,437,463	-		BPHYT_RS15100	0.24	+0.5
3,437,570	+				+1.3
3,437,571	-		BPHYT_RS15100	0.32	-0.5
3,437,585	-		BPHYT_RS15100	0.33	-0.7
3,437,759	+		BPHYT_RS15100	0.45	+0.5
3,437,759	+		BPHYT_RS15100	0.45	-0.1
3,437,759	+		BPHYT_RS15100	0.45	+2.2
3,437,760	-		BPHYT_RS15100	0.45	-0.2
3,437,760	-		BPHYT_RS15100	0.45	+0.7
3,437,760	-		BPHYT_RS15100	0.45	+1.1
3,437,942	+		BPHYT_RS15100	0.59	-0.5
3,437,943	-		BPHYT_RS15100	0.59	-0.9
3,437,943	-		BPHYT_RS15100	0.59	-0.0
3,438,231	-		BPHYT_RS15100	0.80	-0.1
3,438,231	-		BPHYT_RS15100	0.80	+1.3
3,438,425	+				-0.2
3,438,426	-				+0.9
3,438,522	+				+0.4
3,438,522	+				-1.5
3,438,522	+				+0.3
3,438,534	+				+0.7
3,438,573	+				+0.2
3,438,653	+				-0.3
3,438,653	+				+2.5
3,438,654	-				+0.3
3,438,654	-				-1.2
3,438,654	-				+0.6
3,438,678	-				-0.5
3,438,678	-				-1.7
3,438,790	-				+0.5
3,438,996	-		BPHYT_RS15105	0.32	+1.3
3,439,492	+		BPHYT_RS15105	0.72	+0.3
3,439,493	-		BPHYT_RS15105	0.72	-0.7