Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15085 and BPHYT_RS15090 are separated by 96 nucleotides BPHYT_RS15090 and BPHYT_RS15095 are separated by 82 nucleotides
BPHYT_RS15085: BPHYT_RS15085 - aldehyde oxidase, at 3,432,382 to 3,434,784
_RS15085
BPHYT_RS15090: BPHYT_RS15090 - xanthine dehydrogenase accessory protein XdhC, at 3,434,881 to 3,435,897
_RS15090
BPHYT_RS15095: BPHYT_RS15095 - adenine deaminase, at 3,435,980 to 3,437,032
_RS15095
Position (kb)
3434
3435
3436 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3434.258 kb on - strand, within BPHYT_RS15085 at 3434.482 kb on + strand, within BPHYT_RS15085 at 3434.866 kb on + strand at 3434.867 kb on - strand at 3434.867 kb on - strand at 3434.867 kb on - strand at 3435.255 kb on + strand, within BPHYT_RS15090 at 3435.260 kb on + strand, within BPHYT_RS15090 at 3435.594 kb on + strand, within BPHYT_RS15090 at 3435.598 kb on + strand, within BPHYT_RS15090 at 3435.598 kb on + strand, within BPHYT_RS15090 at 3435.599 kb on - strand, within BPHYT_RS15090 at 3435.599 kb on - strand, within BPHYT_RS15090 at 3435.599 kb on - strand, within BPHYT_RS15090 at 3435.985 kb on + strand at 3435.986 kb on - strand at 3435.986 kb on - strand at 3436.051 kb on + strand at 3436.051 kb on + strand at 3436.051 kb on + strand at 3436.051 kb on + strand at 3436.058 kb on - strand at 3436.154 kb on + strand, within BPHYT_RS15095 at 3436.154 kb on + strand, within BPHYT_RS15095 at 3436.155 kb on - strand, within BPHYT_RS15095 at 3436.191 kb on - strand, within BPHYT_RS15095 at 3436.191 kb on - strand at 3436.193 kb on + strand, within BPHYT_RS15095 at 3436.193 kb on + strand, within BPHYT_RS15095 at 3436.250 kb on + strand, within BPHYT_RS15095 at 3436.251 kb on - strand, within BPHYT_RS15095 at 3436.428 kb on + strand, within BPHYT_RS15095 at 3436.428 kb on + strand, within BPHYT_RS15095 at 3436.485 kb on - strand, within BPHYT_RS15095 at 3436.625 kb on + strand, within BPHYT_RS15095 at 3436.865 kb on + strand, within BPHYT_RS15095 at 3436.880 kb on + strand, within BPHYT_RS15095
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 3,434,258 - BPHYT_RS15085 0.78 -0.1 3,434,482 + BPHYT_RS15085 0.87 +0.9 3,434,866 + -0.1 3,434,867 - -0.8 3,434,867 - -0.3 3,434,867 - +0.1 3,435,255 + BPHYT_RS15090 0.37 -0.1 3,435,260 + BPHYT_RS15090 0.37 -0.9 3,435,594 + BPHYT_RS15090 0.70 -2.0 3,435,598 + BPHYT_RS15090 0.71 -1.0 3,435,598 + BPHYT_RS15090 0.71 -0.7 3,435,599 - BPHYT_RS15090 0.71 -0.8 3,435,599 - BPHYT_RS15090 0.71 -1.9 3,435,599 - BPHYT_RS15090 0.71 +1.5 3,435,985 + -0.1 3,435,986 - +0.5 3,435,986 - +0.7 3,436,051 + +0.1 3,436,051 + +0.9 3,436,051 + +0.3 3,436,051 + +2.2 3,436,058 - -0.9 3,436,154 + BPHYT_RS15095 0.17 -1.7 3,436,154 + BPHYT_RS15095 0.17 -0.3 3,436,155 - BPHYT_RS15095 0.17 -0.8 3,436,191 - BPHYT_RS15095 0.20 -1.2 3,436,191 - +1.3 3,436,193 + BPHYT_RS15095 0.20 -0.2 3,436,193 + BPHYT_RS15095 0.20 -0.5 3,436,250 + BPHYT_RS15095 0.26 +0.9 3,436,251 - BPHYT_RS15095 0.26 -1.0 3,436,428 + BPHYT_RS15095 0.43 +0.2 3,436,428 + BPHYT_RS15095 0.43 +1.2 3,436,485 - BPHYT_RS15095 0.48 -1.1 3,436,625 + BPHYT_RS15095 0.61 -0.5 3,436,865 + BPHYT_RS15095 0.84 -1.6 3,436,880 + BPHYT_RS15095 0.85 +2.4
Or see this region's nucleotide sequence