Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15005

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,410,675	+		BPHYT_RS14995	0.86	+0.2
3,410,914	+				+0.2
3,410,967	+				-0.3
3,410,968	-				+2.1
3,410,968	-				-1.0
3,411,338	-				-0.3
3,411,650	+				-1.9
3,411,651	-				+0.4
3,411,651	-				-0.1
3,411,671	+				-1.2
3,411,671	+				+0.5
3,411,672	-				-0.9
3,411,672	-				-1.9
3,411,672	-				-0.9
3,411,696	-				-0.5
3,411,696	-				-0.7
3,412,226	+		BPHYT_RS15005	0.40	-0.8
3,412,654	-		BPHYT_RS15005	0.64	-1.1
3,412,791	-		BPHYT_RS15005	0.72	-0.3
3,413,297	+				-0.2
3,413,297	+				-1.4
3,413,298	-				-0.4
3,413,302	+				-0.9
3,413,303	-				-0.6
3,413,515	+				-1.5
3,413,803	-		BPHYT_RS15010	0.35	+0.9
3,413,803	-		BPHYT_RS15010	0.35	+0.6
3,413,804	+		BPHYT_RS15010	0.35	-0.2
3,413,862	+		BPHYT_RS15010	0.41	+0.1
3,413,863	-		BPHYT_RS15010	0.41	+0.6
3,414,100	-		BPHYT_RS15010	0.62	-1.7