Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14820

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,370,632	+		BPHYT_RS14810	0.67	+0.0
3,370,633	-		BPHYT_RS14810	0.68	-3.2
3,370,698	+		BPHYT_RS14810	0.76	+2.5
3,370,699	-		BPHYT_RS14810	0.76	+0.2
3,370,699	-		BPHYT_RS14810	0.76	+1.6
3,370,909	+				-1.2
3,370,926	+				-0.4
3,370,927	-				-0.8
3,370,980	-				+0.6
3,370,980	-				+1.3
3,370,980	-				-1.4
3,371,044	-		BPHYT_RS14815	0.18	-0.5
3,371,287	+		BPHYT_RS14815	0.55	+0.7
3,371,287	+		BPHYT_RS14815	0.55	-1.3
3,371,463	+		BPHYT_RS14815	0.82	-1.9
3,371,463	+		BPHYT_RS14815	0.82	+0.1
3,371,464	-		BPHYT_RS14815	0.82	-0.4
3,371,578	+				+5.4
3,371,578	+				-0.6
3,371,578	+				-0.2
3,371,617	+				+0.1
3,372,304	+		BPHYT_RS14820	0.71	-0.7
3,372,304	+		BPHYT_RS14820	0.71	-0.3
3,372,419	+		BPHYT_RS14820	0.82	+1.5
3,372,467	+		BPHYT_RS14820	0.87	-0.6
3,372,468	-		BPHYT_RS14820	0.87	-0.8
3,372,584	+				-0.1
3,372,585	-				+0.7
3,372,585	-				-1.0
3,372,585	-				+1.5
3,372,591	+				+0.4
3,372,591	+				+0.1
3,372,592	-				-0.8
3,372,671	+				-1.8
3,372,695	+				-0.4
3,372,805	+				+0.4
3,372,868	+				+0.3
3,372,868	+				+0.5
3,372,868	+				+1.1
3,372,868	+				-1.2
3,372,869	-				+0.3
3,372,869	-				-0.0
3,372,869	-				-0.9
3,372,869	-				-0.5
3,372,952	+		BPHYT_RS14825	0.12	+0.1
3,372,958	+		BPHYT_RS14825	0.13	-1.4
3,372,958	+		BPHYT_RS14825	0.13	-0.6
3,372,961	-		BPHYT_RS14825	0.13	-2.2
3,373,128	+		BPHYT_RS14825	0.31	-0.1
3,373,129	-		BPHYT_RS14825	0.31	-0.0
3,373,149	+		BPHYT_RS14825	0.34	-0.2
3,373,150	-		BPHYT_RS14825	0.34	+0.5
3,373,249	-		BPHYT_RS14825	0.45	+0.2
3,373,249	-		BPHYT_RS14825	0.45	-0.3
3,373,567	-		BPHYT_RS14825	0.79	+0.2
3,373,567	-		BPHYT_RS14825	0.79	-1.2