Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14540

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,314,197	+		BPHYT_RS14535	0.49	-0.5
3,314,300	-		BPHYT_RS14535	0.58	-1.2
3,314,383	+		BPHYT_RS14535	0.65	-0.6
3,314,384	-		BPHYT_RS14535	0.65	+2.1
3,314,402	+				+1.0
3,314,403	-		BPHYT_RS14535	0.66	+0.4
3,314,403	-		BPHYT_RS14535	0.66	-1.4
3,314,460	-		BPHYT_RS14535	0.71	-0.9
3,314,460	-		BPHYT_RS14535	0.71	+0.5
3,314,460	-		BPHYT_RS14535	0.71	+1.5
3,314,531	-		BPHYT_RS14535	0.77	+0.5
3,314,531	-		BPHYT_RS14535	0.77	+0.4
3,314,602	+		BPHYT_RS14535	0.83	-0.2
3,314,602	+		BPHYT_RS14535	0.83	-1.5
3,314,671	+		BPHYT_RS14535	0.89	-2.2
3,314,677	-		BPHYT_RS14535	0.89	-0.5
3,314,696	+				+0.2
3,314,697	-				-0.7
3,314,714	-				+0.5
3,314,770	+				-0.4
3,314,795	+				-1.8
3,314,799	-				-0.8
3,314,799	-				+1.2
3,314,799	-				-1.6
3,314,988	+				-0.7
3,314,989	-				+0.0
3,314,989	-				-1.4
3,315,002	+				+0.9
3,315,005	-				+0.6
3,315,048	+				+0.1
3,315,048	+				-1.2
3,315,048	+				-0.4
3,315,049	-				+0.7
3,315,049	-				+0.2
3,315,660	+				+0.6
3,315,676	+				+0.3
3,315,676	+				-0.8
3,315,680	+				+0.1
3,315,691	+				-1.0
3,315,743	-		BPHYT_RS14550	0.57	+0.8
3,315,930	+				+1.0
3,315,930	+				+0.5
3,315,930	+				+0.6
3,315,931	-				+0.5
3,315,931	-				-0.2
3,315,931	-				-0.0
3,316,167	+		BPHYT_RS14555	0.35	+0.7
3,316,167	+		BPHYT_RS14555	0.35	-1.3
3,316,168	-		BPHYT_RS14555	0.35	+0.5
3,316,168	-		BPHYT_RS14555	0.35	+0.8
3,316,380	+		BPHYT_RS14555	0.80	-0.9
3,316,380	+		BPHYT_RS14555	0.80	-0.2
3,316,381	-		BPHYT_RS14555	0.80	+1.2
3,316,389	+		BPHYT_RS14555	0.82	-0.8