Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14145

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,228,619	+		BPHYT_RS14140	0.16	+0.2
3,228,619	+		BPHYT_RS14140	0.16	+0.1
3,228,620	-		BPHYT_RS14140	0.16	+4.6
3,228,997	-		BPHYT_RS14140	0.53	+4.4
3,229,194	+		BPHYT_RS14140	0.73	+2.1
3,229,195	-		BPHYT_RS14140	0.73	+4.2
3,229,195	-		BPHYT_RS14140	0.73	+4.9
3,229,531	-				+0.4
3,229,572	-				+0.4
3,229,572	-				-0.1
3,229,575	+				+1.1
3,229,575	+				+0.3
3,229,575	+				+0.4
3,229,576	-				+1.2
3,229,576	-				+0.8
3,229,613	-				+1.0
3,229,613	-				+2.2
3,229,702	+				+0.6
3,229,703	-				+2.4
3,229,703	-				+1.7
3,229,703	-				+1.5
3,229,703	-				+2.0
3,229,703	-				+1.9
3,229,868	-		BPHYT_RS14145	0.25	+3.2
3,229,964	-		BPHYT_RS14145	0.34	+3.1
3,229,964	-				+4.9
3,229,964	-		BPHYT_RS14145	0.34	+1.8
3,230,138	-		BPHYT_RS14145	0.51	+1.9
3,230,269	+		BPHYT_RS14145	0.64	-1.1
3,230,269	+		BPHYT_RS14145	0.64	-0.3
3,230,269	+				+0.2
3,230,269	+		BPHYT_RS14145	0.64	-1.4
3,230,270	-		BPHYT_RS14145	0.64	+1.2
3,230,270	-		BPHYT_RS14145	0.64	+2.7
3,230,270	-		BPHYT_RS14145	0.64	-0.7
3,230,270	-		BPHYT_RS14145	0.64	+1.0
3,230,270	-		BPHYT_RS14145	0.64	+1.9
3,230,270	-		BPHYT_RS14145	0.64	+2.2
3,230,482	+		BPHYT_RS14145	0.84	+0.9
3,230,482	+		BPHYT_RS14145	0.84	-0.1
3,230,483	-		BPHYT_RS14145	0.84	+2.0
3,230,483	-		BPHYT_RS14145	0.84	+1.6
3,230,483	-		BPHYT_RS14145	0.84	+2.0
3,230,483	-		BPHYT_RS14145	0.84	+1.6
3,230,483	-		BPHYT_RS14145	0.84	+1.2
3,230,512	+		BPHYT_RS14145	0.87	-0.1
3,230,512	+		BPHYT_RS14145	0.87	-0.5
3,230,513	-		BPHYT_RS14145	0.87	+2.1
3,230,676	+				+0.8
3,230,676	+				+0.9
3,230,677	-				-1.9
3,230,677	-				-1.4
3,230,698	-				+1.3
3,230,717	-				+0.2
3,230,727	-				+0.2
3,230,755	-				+0.7
3,230,819	+				-0.1
3,230,824	+				+0.1
3,230,919	+				+0.5
3,230,934	+				-1.8