Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13235

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
3,018,294	+				-0.8
3,018,498	+		BPHYT_RS13230	0.30	-1.8
3,018,529	-		BPHYT_RS13230	0.36	+0.1
3,018,592	-		BPHYT_RS13230	0.49	-1.9
3,018,660	+		BPHYT_RS13230	0.63	-0.4
3,018,660	+		BPHYT_RS13230	0.63	-0.1
3,018,661	-		BPHYT_RS13230	0.63	-1.0
3,018,684	+		BPHYT_RS13230	0.68	+0.6
3,018,685	-		BPHYT_RS13230	0.68	-0.2
3,018,685	-		BPHYT_RS13230	0.68	+0.5
3,018,705	+		BPHYT_RS13230	0.72	+0.2
3,018,705	+		BPHYT_RS13230	0.72	+0.2
3,018,706	-		BPHYT_RS13230	0.72	-0.8
3,018,706	-		BPHYT_RS13230	0.72	-0.7
3,018,724	-		BPHYT_RS13230	0.76	-0.5
3,018,735	+		BPHYT_RS13230	0.78	+1.2
3,018,736	-		BPHYT_RS13230	0.78	-1.8
3,018,754	-		BPHYT_RS13230	0.82	-0.5
3,019,042	+				-0.4
3,019,042	+				+0.3
3,019,043	-				+0.8
3,019,057	-				+0.1
3,019,057	-				-1.4
3,019,194	+				-0.2
3,019,194	+				-0.9
3,019,194	+				+0.7
3,019,195	-				+0.1
3,019,195	-				-0.1
3,019,448	+		BPHYT_RS13235	0.17	+0.3
3,019,448	+		BPHYT_RS13235	0.17	-1.7
3,019,805	+		BPHYT_RS13235	0.39	-0.0
3,019,806	-		BPHYT_RS13235	0.39	-0.4
3,019,806	-		BPHYT_RS13235	0.39	-0.7
3,019,820	+		BPHYT_RS13235	0.40	+1.8
3,019,910	+		BPHYT_RS13235	0.46	+0.1
3,019,919	+		BPHYT_RS13235	0.46	-0.2
3,020,201	+		BPHYT_RS13235	0.64	-2.1
3,020,405	+		BPHYT_RS13235	0.77	-1.0
3,020,405	+		BPHYT_RS13235	0.77	-1.0
3,020,406	-		BPHYT_RS13235	0.77	+0.4
3,020,408	-		BPHYT_RS13235	0.77	-0.4
3,020,974	-				-0.6
3,021,168	+				+1.1
3,021,169	-				-0.4
3,021,222	+				-0.4
3,021,362	+		BPHYT_RS13240	0.16	-0.8
3,021,428	+		BPHYT_RS13240	0.23	+1.0
3,021,545	+		BPHYT_RS13240	0.36	-0.9
3,021,623	+		BPHYT_RS13240	0.44	+0.1
3,021,623	+		BPHYT_RS13240	0.44	-1.3
3,021,624	-		BPHYT_RS13240	0.44	-0.1
3,021,725	-		BPHYT_RS13240	0.55	-1.9
3,021,742	+		BPHYT_RS13240	0.57	-0.0