Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11830
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,682,144 | + | BPHYT_RS11825 | 0.53 | +0.4 | |
2,683,443 | + | BPHYT_RS11830 | 0.50 | +0.8 | |
2,683,479 | + | BPHYT_RS11830 | 0.52 | +0.4 | |
2,683,587 | + | BPHYT_RS11830 | 0.59 | -0.7 | |
2,683,588 | - | BPHYT_RS11830 | 0.60 | -0.7 | |
2,683,834 | + | BPHYT_RS11830 | 0.76 | -0.4 | |
2,683,981 | + | BPHYT_RS11830 | 0.86 | -0.4 | |
2,683,986 | + | BPHYT_RS11830 | 0.86 | +0.4 | |
2,683,986 | + | BPHYT_RS11830 | 0.86 | +0.6 | |
2,683,987 | - | BPHYT_RS11830 | 0.87 | +0.7 | |
2,684,355 | - | BPHYT_RS11835 | 0.79 | -0.3 | |
2,684,924 | + | BPHYT_RS11840 | 0.26 | -1.5 | |
2,685,118 | + | BPHYT_RS11840 | 0.48 | -0.3 |
Or see this region's nucleotide sequence