Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09555

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
2,166,532	+		BPHYT_RS09550	0.70	+0.5
2,166,533	-		BPHYT_RS09550	0.70	+0.8
2,166,632	+		BPHYT_RS09550	0.77	-1.3
2,166,632	+		BPHYT_RS09550	0.77	-0.5
2,166,633	-		BPHYT_RS09550	0.77	+0.1
2,166,721	+		BPHYT_RS09550	0.82	+0.2
2,167,025	+				+1.1
2,167,058	+				-0.6
2,167,059	-				+0.5
2,167,062	+				+1.7
2,167,062	+				-0.8
2,167,063	-				-0.1
2,167,189	-				-0.6
2,167,318	+				+0.1
2,167,321	-				+0.3
2,167,321	-				-0.6
2,167,321	-				+0.1
2,167,324	+				-0.1
2,167,325	-				+0.1
2,167,441	+		BPHYT_RS09555	0.15	-0.1
2,167,441	+		BPHYT_RS09555	0.15	+0.7
2,167,513	+		BPHYT_RS09555	0.19	+3.5
2,167,514	-		BPHYT_RS09555	0.19	-0.2
2,167,514	-		BPHYT_RS09555	0.19	-1.8
2,167,670	-		BPHYT_RS09555	0.29	+0.1
2,167,670	-		BPHYT_RS09555	0.29	-1.2
2,167,703	-		BPHYT_RS09555	0.30	-0.8
2,167,739	-		BPHYT_RS09555	0.33	+1.1
2,167,739	-		BPHYT_RS09555	0.33	-0.4
2,168,004	+		BPHYT_RS09555	0.48	-1.0
2,168,031	-		BPHYT_RS09555	0.50	-0.4
2,168,287	+		BPHYT_RS09555	0.65	+1.8
2,168,288	-		BPHYT_RS09555	0.65	-0.7
2,168,790	-				+1.6
2,169,047	+				+0.3
2,169,048	-				-1.1
2,169,369	-		BPHYT_RS09560	0.16	-0.0
2,169,734	-		BPHYT_RS09560	0.34	-0.5