Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08805
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,994,519 | + | BPHYT_RS08800 | 0.18 | -2.5 | |
1,994,662 | + | BPHYT_RS08800 | 0.31 | -1.6 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | -0.1 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | +0.0 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | +1.1 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | +0.4 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | -0.9 | |
1,994,753 | + | BPHYT_RS08800 | 0.40 | -0.3 | |
1,995,258 | - | BPHYT_RS08800 | 0.88 | +0.5 | |
1,995,383 | + | +0.8 | |||
1,995,816 | + | BPHYT_RS08805 | 0.41 | +0.9 | |
1,995,885 | - | BPHYT_RS08805 | 0.47 | +1.4 | |
1,995,946 | - | BPHYT_RS08805 | 0.53 | -1.0 | |
1,996,057 | + | BPHYT_RS08805 | 0.63 | +0.2 | |
1,996,057 | + | BPHYT_RS08805 | 0.63 | +1.2 | |
1,996,204 | + | BPHYT_RS08805 | 0.77 | +0.9 | |
1,996,205 | - | BPHYT_RS08805 | 0.77 | -0.5 | |
1,996,208 | + | BPHYT_RS08805 | 0.78 | +0.5 | |
1,996,790 | + | BPHYT_RS08810 | 0.28 | -0.2 | |
1,996,848 | - | BPHYT_RS08810 | 0.34 | -0.2 | |
1,997,021 | + | BPHYT_RS08810 | 0.53 | +0.2 | |
1,997,022 | - | BPHYT_RS08810 | 0.53 | -0.6 | |
1,997,120 | + | BPHYT_RS08810 | 0.63 | +1.1 | |
1,997,228 | + | BPHYT_RS08810 | 0.75 | -2.3 | |
1,997,273 | + | BPHYT_RS08810 | 0.80 | -2.9 |
Or see this region's nucleotide sequence