Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS07595

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS07590 and BPHYT_RS07595 are separated by 139 nucleotidesBPHYT_RS07595 and BPHYT_RS07600 are separated by 61 nucleotides BPHYT_RS07590: BPHYT_RS07590 - hypothetical protein, at 1,726,193 to 1,726,858 _RS07590 BPHYT_RS07595: BPHYT_RS07595 - membrane protein, at 1,726,998 to 1,728,911 _RS07595 BPHYT_RS07600: BPHYT_RS07600 - amino acid ABC transporter substrate-binding protein, at 1,728,973 to 1,730,124 _RS07600 Position (kb) 1726 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1at 1726.059 kb on - strandat 1726.162 kb on + strandat 1726.163 kb on - strandat 1727.087 kb on + strandat 1728.350 kb on + strand, within BPHYT_RS07595at 1728.351 kb on - strand, within BPHYT_RS07595at 1729.026 kb on - strandat 1729.184 kb on + strand, within BPHYT_RS07600at 1729.284 kb on - strand, within BPHYT_RS07600

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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1,726,059 - -0.6
1,726,162 + -1.1
1,726,163 - +0.0
1,727,087 + -0.7
1,728,350 + BPHYT_RS07595 0.71 -1.2
1,728,351 - BPHYT_RS07595 0.71 -1.8
1,729,026 - +0.8
1,729,184 + BPHYT_RS07600 0.18 +0.1
1,729,284 - BPHYT_RS07600 0.27 -0.2

Or see this region's nucleotide sequence