Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07320 and BPHYT_RS07325 are separated by 50 nucleotides BPHYT_RS07325 and BPHYT_RS07330 are separated by 276 nucleotides BPHYT_RS07330 and BPHYT_RS07335 are separated by 38 nucleotides
BPHYT_RS07320: BPHYT_RS07320 - dihydrodipicolinate synthetase, at 1,660,655 to 1,661,563
_RS07320
BPHYT_RS07325: BPHYT_RS07325 - GntR family transcriptional regulator, at 1,661,614 to 1,662,273
_RS07325
BPHYT_RS07330: BPHYT_RS07330 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,662,550 to 1,663,470
_RS07330
BPHYT_RS07335: BPHYT_RS07335 - nitrate ABC transporter permease, at 1,663,509 to 1,664,576
_RS07335
Position (kb) 1662
1663
1664 Strain fitness (log2 ratio) -1
0
1
2 at 1661.907 kb on - strand, within BPHYT_RS07325 at 1662.361 kb on - strand at 1662.476 kb on + strand at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.957 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.309 kb on + strand, within BPHYT_RS07330 at 1663.737 kb on + strand, within BPHYT_RS07335 at 1664.208 kb on + strand, within BPHYT_RS07335 at 1664.209 kb on - strand, within BPHYT_RS07335 at 1664.314 kb on - strand, within BPHYT_RS07335
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 1,661,907 - BPHYT_RS07325 0.44 +0.7 1,662,361 - +0.2 1,662,476 + -0.6 1,662,908 - BPHYT_RS07330 0.39 +1.1 1,662,908 - BPHYT_RS07330 0.39 +2.0 1,662,908 - BPHYT_RS07330 0.39 -0.1 1,662,957 - BPHYT_RS07330 0.44 +0.0 1,663,270 - BPHYT_RS07330 0.78 -0.3 1,663,270 - BPHYT_RS07330 0.78 +0.7 1,663,270 - BPHYT_RS07330 0.78 +1.1 1,663,309 + BPHYT_RS07330 0.82 +0.0 1,663,737 + BPHYT_RS07335 0.21 +0.9 1,664,208 + BPHYT_RS07335 0.65 -0.8 1,664,209 - BPHYT_RS07335 0.66 -1.5 1,664,314 - BPHYT_RS07335 0.75 +1.5
Or see this region's nucleotide sequence