Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05565

Experiment: 36hr PHYTO4 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO4 MOI 1
1,277,944	-		BPHYT_RS05560	0.86	+1.6
1,277,973	+		BPHYT_RS05560	0.89	+2.3
1,277,973	+		BPHYT_RS05560	0.89	+1.8
1,277,973	+		BPHYT_RS05560	0.89	+1.8
1,277,974	-		BPHYT_RS05560	0.89	+2.2
1,278,089	-				+2.0
1,278,163	+				+1.4
1,278,182	+				+1.8
1,278,361	+				-1.2
1,278,361	+				+0.2
1,278,361	+				+1.3
1,278,361	+				-0.7
1,278,361	+				+0.1
1,278,361	+				-0.4
1,278,361	+				-0.0
1,278,361	+				+0.3
1,278,361	+				-2.9
1,278,361	+				-0.1
1,278,362	-				-1.3
1,278,362	-				-0.9
1,278,362	-				+1.6
1,278,362	-				-0.8
1,278,407	-				-1.3
1,278,407	-				-1.1
1,278,699	-		BPHYT_RS05565	0.75	-0.5
1,278,699	-		BPHYT_RS05565	0.75	-3.1
1,278,895	+		BPHYT_RS05570	0.25	+0.1
1,279,094	+				-1.1
1,279,185	+				+1.6
1,279,186	-				-0.4
1,279,191	-				+2.3
1,279,194	+				+0.5
1,279,198	+				-1.6
1,279,239	-				+2.1
1,279,305	+				+0.3
1,279,305	+				-0.9
1,279,305	+				+0.5
1,279,306	-				+1.8
1,279,306	-				+2.3
1,279,416	+				+2.1
1,279,416	+				+2.5
1,279,416	+				+2.6
1,279,417	-				+2.9
1,279,417	-				+2.9
1,279,417	-				+2.9
1,279,417	-				+2.9
1,279,417	-				+2.8
1,279,417	-				+2.4
1,279,417	-				+2.9
1,279,555	+		BPHYT_RS05575	0.11	+2.6
1,279,697	+		BPHYT_RS05575	0.21	+2.2
1,279,697	+		BPHYT_RS05575	0.21	+2.3