Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04315 and BPHYT_RS04320 are separated by 120 nucleotides BPHYT_RS04320 and BPHYT_RS04325 are separated by 197 nucleotides
BPHYT_RS04315: BPHYT_RS04315 - UDP-N-acetylglucosamine 2-epimerase, at 993,169 to 994,305
_RS04315
BPHYT_RS04320: BPHYT_RS04320 - hypothetical protein, at 994,426 to 995,727
_RS04320
BPHYT_RS04325: BPHYT_RS04325 - acyltransferase 3, at 995,925 to 997,088
_RS04325
Position (kb) 994
995
996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 993.693 kb on + strand, within BPHYT_RS04315 at 993.713 kb on - strand, within BPHYT_RS04315 at 993.713 kb on - strand, within BPHYT_RS04315 at 993.895 kb on - strand, within BPHYT_RS04315 at 993.912 kb on + strand, within BPHYT_RS04315 at 993.913 kb on - strand, within BPHYT_RS04315 at 993.970 kb on + strand, within BPHYT_RS04315 at 993.971 kb on - strand, within BPHYT_RS04315 at 993.991 kb on + strand, within BPHYT_RS04315 at 994.029 kb on + strand, within BPHYT_RS04315 at 994.030 kb on - strand, within BPHYT_RS04315 at 994.610 kb on + strand, within BPHYT_RS04320 at 994.666 kb on + strand, within BPHYT_RS04320 at 994.675 kb on + strand, within BPHYT_RS04320 at 994.712 kb on - strand, within BPHYT_RS04320 at 994.712 kb on - strand, within BPHYT_RS04320 at 994.811 kb on - strand, within BPHYT_RS04320 at 994.811 kb on - strand, within BPHYT_RS04320 at 995.003 kb on + strand, within BPHYT_RS04320 at 995.003 kb on + strand, within BPHYT_RS04320 at 995.253 kb on + strand, within BPHYT_RS04320 at 995.298 kb on + strand, within BPHYT_RS04320 at 995.299 kb on - strand, within BPHYT_RS04320 at 995.300 kb on + strand, within BPHYT_RS04320 at 995.300 kb on + strand, within BPHYT_RS04320 at 995.301 kb on - strand, within BPHYT_RS04320 at 995.344 kb on + strand, within BPHYT_RS04320 at 995.344 kb on + strand, within BPHYT_RS04320 at 995.344 kb on + strand, within BPHYT_RS04320 at 995.477 kb on - strand, within BPHYT_RS04320 at 995.634 kb on + strand at 995.765 kb on + strand at 995.765 kb on + strand at 995.765 kb on + strand at 995.765 kb on + strand at 995.766 kb on - strand at 995.924 kb on + strand at 996.034 kb on - strand at 996.034 kb on - strand at 996.034 kb on - strand at 996.034 kb on - strand at 996.147 kb on - strand, within BPHYT_RS04325 at 996.150 kb on + strand, within BPHYT_RS04325 at 996.151 kb on - strand, within BPHYT_RS04325 at 996.151 kb on - strand, within BPHYT_RS04325 at 996.179 kb on + strand, within BPHYT_RS04325 at 996.180 kb on - strand, within BPHYT_RS04325 at 996.301 kb on - strand, within BPHYT_RS04325 at 996.363 kb on + strand, within BPHYT_RS04325 at 996.487 kb on + strand, within BPHYT_RS04325 at 996.509 kb on + strand, within BPHYT_RS04325 at 996.540 kb on - strand, within BPHYT_RS04325 at 996.705 kb on + strand, within BPHYT_RS04325 at 996.716 kb on + strand, within BPHYT_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 993,693 + BPHYT_RS04315 0.46 -0.0 993,713 - BPHYT_RS04315 0.48 +1.3 993,713 - BPHYT_RS04315 0.48 +1.2 993,895 - BPHYT_RS04315 0.64 +2.6 993,912 + BPHYT_RS04315 0.65 +0.6 993,913 - BPHYT_RS04315 0.65 +1.5 993,970 + BPHYT_RS04315 0.70 +0.5 993,971 - BPHYT_RS04315 0.71 +1.4 993,991 + BPHYT_RS04315 0.72 +0.3 994,029 + BPHYT_RS04315 0.76 +0.7 994,030 - BPHYT_RS04315 0.76 +1.8 994,610 + BPHYT_RS04320 0.14 -0.7 994,666 + BPHYT_RS04320 0.18 -1.8 994,675 + BPHYT_RS04320 0.19 +0.4 994,712 - BPHYT_RS04320 0.22 -0.4 994,712 - BPHYT_RS04320 0.22 -0.6 994,811 - BPHYT_RS04320 0.30 -0.9 994,811 - BPHYT_RS04320 0.30 +1.2 995,003 + BPHYT_RS04320 0.44 -0.9 995,003 + BPHYT_RS04320 0.44 -1.9 995,253 + BPHYT_RS04320 0.64 -2.5 995,298 + BPHYT_RS04320 0.67 -0.9 995,299 - BPHYT_RS04320 0.67 -0.4 995,300 + BPHYT_RS04320 0.67 -1.4 995,300 + BPHYT_RS04320 0.67 +1.6 995,301 - BPHYT_RS04320 0.67 +0.6 995,344 + BPHYT_RS04320 0.71 +0.2 995,344 + BPHYT_RS04320 0.71 -0.8 995,344 + BPHYT_RS04320 0.71 -0.9 995,477 - BPHYT_RS04320 0.81 -1.0 995,634 + -0.4 995,765 + -0.7 995,765 + -2.4 995,765 + -0.2 995,765 + -0.5 995,766 - +0.5 995,924 + -0.5 996,034 - -0.6 996,034 - -3.3 996,034 - -1.1 996,034 - +1.0 996,147 - BPHYT_RS04325 0.19 -1.1 996,150 + BPHYT_RS04325 0.19 -0.7 996,151 - BPHYT_RS04325 0.19 -1.0 996,151 - BPHYT_RS04325 0.19 +0.0 996,179 + BPHYT_RS04325 0.22 +2.2 996,180 - BPHYT_RS04325 0.22 +0.0 996,301 - BPHYT_RS04325 0.32 -1.8 996,363 + BPHYT_RS04325 0.38 -0.5 996,487 + BPHYT_RS04325 0.48 -1.0 996,509 + BPHYT_RS04325 0.50 -0.7 996,540 - BPHYT_RS04325 0.53 -0.3 996,705 + BPHYT_RS04325 0.67 -0.9 996,716 + BPHYT_RS04325 0.68 +0.1
Or see this region's nucleotide sequence