Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS03110

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS03105 and BPHYT_RS03110 are separated by 31 nucleotidesBPHYT_RS03110 and BPHYT_RS03115 are separated by 125 nucleotides BPHYT_RS03105: BPHYT_RS03105 - DSBA oxidoreductase, at 694,600 to 696,195 _RS03105 BPHYT_RS03110: BPHYT_RS03110 - MarR family transcriptional regulator, at 696,227 to 696,736 _RS03110 BPHYT_RS03115: BPHYT_RS03115 - amino acid deaminase, at 696,862 to 698,139 _RS03115 Position (kb) 696 697Strain fitness (log2 ratio) -2 -1 0 1 2at 695.491 kb on + strand, within BPHYT_RS03105at 695.491 kb on + strandat 695.491 kb on + strand, within BPHYT_RS03105at 695.637 kb on + strand, within BPHYT_RS03105at 695.638 kb on + strand, within BPHYT_RS03105at 695.638 kb on + strand, within BPHYT_RS03105at 695.638 kb on + strand, within BPHYT_RS03105at 695.638 kb on + strand, within BPHYT_RS03105at 695.639 kb on - strand, within BPHYT_RS03105at 695.892 kb on + strand, within BPHYT_RS03105at 695.892 kb on + strand, within BPHYT_RS03105at 695.892 kb on + strand, within BPHYT_RS03105at 695.893 kb on - strand, within BPHYT_RS03105at 695.893 kb on - strand, within BPHYT_RS03105at 695.896 kb on + strand, within BPHYT_RS03105at 695.896 kb on + strand, within BPHYT_RS03105at 695.897 kb on - strand, within BPHYT_RS03105at 695.997 kb on + strand, within BPHYT_RS03105at 696.529 kb on + strandat 696.530 kb on - strand, within BPHYT_RS03110at 696.530 kb on - strand, within BPHYT_RS03110at 696.897 kb on - strandat 697.013 kb on + strand, within BPHYT_RS03115at 697.014 kb on - strand, within BPHYT_RS03115at 697.014 kb on - strand, within BPHYT_RS03115at 697.095 kb on - strand, within BPHYT_RS03115at 697.148 kb on - strand, within BPHYT_RS03115at 697.148 kb on - strand, within BPHYT_RS03115at 697.190 kb on + strand, within BPHYT_RS03115at 697.190 kb on + strand, within BPHYT_RS03115at 697.190 kb on + strand, within BPHYT_RS03115at 697.191 kb on - strand, within BPHYT_RS03115at 697.191 kb on - strand, within BPHYT_RS03115at 697.191 kb on - strand, within BPHYT_RS03115at 697.280 kb on + strand, within BPHYT_RS03115at 697.304 kb on + strand, within BPHYT_RS03115at 697.331 kb on - strand, within BPHYT_RS03115at 697.331 kb on - strand, within BPHYT_RS03115at 697.379 kb on + strand, within BPHYT_RS03115at 697.379 kb on + strand, within BPHYT_RS03115at 697.515 kb on - strand, within BPHYT_RS03115at 697.515 kb on - strand, within BPHYT_RS03115at 697.515 kb on - strand, within BPHYT_RS03115

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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695,491 + BPHYT_RS03105 0.56 -0.2
695,491 + +0.3
695,491 + BPHYT_RS03105 0.56 -0.9
695,637 + BPHYT_RS03105 0.65 +0.2
695,638 + BPHYT_RS03105 0.65 -1.3
695,638 + BPHYT_RS03105 0.65 +0.1
695,638 + BPHYT_RS03105 0.65 +0.1
695,638 + BPHYT_RS03105 0.65 +0.2
695,639 - BPHYT_RS03105 0.65 -0.2
695,892 + BPHYT_RS03105 0.81 +0.2
695,892 + BPHYT_RS03105 0.81 -0.9
695,892 + BPHYT_RS03105 0.81 +0.2
695,893 - BPHYT_RS03105 0.81 +0.3
695,893 - BPHYT_RS03105 0.81 +1.0
695,896 + BPHYT_RS03105 0.81 -0.1
695,896 + BPHYT_RS03105 0.81 +1.0
695,897 - BPHYT_RS03105 0.81 -0.2
695,997 + BPHYT_RS03105 0.88 +0.6
696,529 + +1.1
696,530 - BPHYT_RS03110 0.59 -1.7
696,530 - BPHYT_RS03110 0.59 +1.6
696,897 - -0.7
697,013 + BPHYT_RS03115 0.12 -0.5
697,014 - BPHYT_RS03115 0.12 -1.7
697,014 - BPHYT_RS03115 0.12 -0.1
697,095 - BPHYT_RS03115 0.18 -0.6
697,148 - BPHYT_RS03115 0.22 -0.2
697,148 - BPHYT_RS03115 0.22 -0.6
697,190 + BPHYT_RS03115 0.26 -0.1
697,190 + BPHYT_RS03115 0.26 +1.2
697,190 + BPHYT_RS03115 0.26 +0.4
697,191 - BPHYT_RS03115 0.26 -0.8
697,191 - BPHYT_RS03115 0.26 -0.0
697,191 - BPHYT_RS03115 0.26 -1.8
697,280 + BPHYT_RS03115 0.33 -0.3
697,304 + BPHYT_RS03115 0.35 +1.0
697,331 - BPHYT_RS03115 0.37 -0.2
697,331 - BPHYT_RS03115 0.37 -0.4
697,379 + BPHYT_RS03115 0.40 -0.5
697,379 + BPHYT_RS03115 0.40 -1.4
697,515 - BPHYT_RS03115 0.51 -0.6
697,515 - BPHYT_RS03115 0.51 +2.2
697,515 - BPHYT_RS03115 0.51 +0.5

Or see this region's nucleotide sequence