Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03085 and BPHYT_RS03090 are separated by 496 nucleotides BPHYT_RS03090 and BPHYT_RS03095 are separated by 117 nucleotides
BPHYT_RS03085: BPHYT_RS03085 - histidine kinase, at 687,338 to 691,645
_RS03085
BPHYT_RS03090: BPHYT_RS03090 - hypothetical protein, at 692,142 to 692,576
_RS03090
BPHYT_RS03095: BPHYT_RS03095 - alpha/beta hydrolase, at 692,694 to 693,650
_RS03095
Position (kb) 692
693 Strain fitness (log2 ratio) -1
0
1
2 at 691.181 kb on + strand, within BPHYT_RS03085 at 691.182 kb on - strand, within BPHYT_RS03085 at 691.432 kb on + strand at 691.694 kb on - strand at 691.857 kb on - strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.920 kb on + strand at 691.921 kb on - strand at 691.967 kb on + strand at 692.076 kb on + strand at 692.080 kb on - strand at 692.213 kb on + strand, within BPHYT_RS03090 at 692.337 kb on + strand, within BPHYT_RS03090 at 692.338 kb on - strand, within BPHYT_RS03090 at 692.621 kb on - strand at 692.621 kb on - strand at 692.621 kb on - strand at 692.659 kb on - strand at 692.958 kb on + strand, within BPHYT_RS03095 at 692.958 kb on + strand, within BPHYT_RS03095 at 692.959 kb on - strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 692.992 kb on + strand, within BPHYT_RS03095 at 693.039 kb on + strand, within BPHYT_RS03095 at 693.040 kb on - strand, within BPHYT_RS03095
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 691,181 + BPHYT_RS03085 0.89 +2.6 691,182 - BPHYT_RS03085 0.89 -0.3 691,432 + +0.8 691,694 - +0.2 691,857 - -0.0 691,920 + -1.1 691,920 + -1.5 691,920 + +2.6 691,920 + -1.5 691,921 - -1.5 691,967 + +1.8 692,076 + -0.5 692,080 - +0.5 692,213 + BPHYT_RS03090 0.16 -0.5 692,337 + BPHYT_RS03090 0.45 -1.4 692,338 - BPHYT_RS03090 0.45 +0.2 692,621 - +0.6 692,621 - +1.1 692,621 - -0.3 692,659 - -0.2 692,958 + BPHYT_RS03095 0.28 +0.5 692,958 + BPHYT_RS03095 0.28 +0.4 692,959 - BPHYT_RS03095 0.28 -0.4 692,992 + BPHYT_RS03095 0.31 +0.1 692,992 + BPHYT_RS03095 0.31 -0.7 693,039 + BPHYT_RS03095 0.36 +0.5 693,040 - BPHYT_RS03095 0.36 +0.4
Or see this region's nucleotide sequence