Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS02480
Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO4 MOI 1 |
---|---|---|---|---|---|
remove | |||||
561,477 | - | BPHYT_RS02475 | 0.51 | +1.9 | |
561,477 | - | BPHYT_RS02475 | 0.51 | -1.9 | |
561,529 | + | BPHYT_RS02475 | 0.54 | +0.2 | |
561,786 | - | BPHYT_RS02475 | 0.69 | -0.9 | |
562,094 | + | BPHYT_RS02475 | 0.88 | +0.6 | |
562,439 | - | BPHYT_RS02480 | 0.14 | -1.3 | |
562,471 | + | BPHYT_RS02480 | 0.18 | -0.5 | |
563,144 | + | +0.3 | |||
563,197 | - | +0.2 | |||
563,204 | + | +0.2 | |||
563,205 | - | +0.2 | |||
563,286 | + | +2.2 | |||
563,546 | + | -1.1 | |||
563,638 | + | -1.8 | |||
563,639 | - | -1.8 | |||
563,652 | + | +0.0 | |||
563,667 | + | +1.0 | |||
563,691 | - | +0.5 |
Or see this region's nucleotide sequence