Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02320 and BPHYT_RS02325 are separated by 183 nucleotides BPHYT_RS02325 and BPHYT_RS02330 are separated by 281 nucleotides
BPHYT_RS02320: BPHYT_RS02320 - 3-oxoadipate enol-lactonase, at 531,679 to 532,467
_RS02320
BPHYT_RS02325: BPHYT_RS02325 - hypothetical protein, at 532,651 to 533,958
_RS02325
BPHYT_RS02330: BPHYT_RS02330 - IclR family transcriptional regulator, at 534,240 to 535,142
_RS02330
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 531.680 kb on + strand at 531.796 kb on + strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.797 kb on - strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.807 kb on + strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.808 kb on - strand, within BPHYT_RS02320 at 531.879 kb on + strand, within BPHYT_RS02320 at 531.880 kb on - strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.886 kb on + strand, within BPHYT_RS02320 at 531.923 kb on + strand, within BPHYT_RS02320 at 531.924 kb on - strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 531.949 kb on + strand, within BPHYT_RS02320 at 532.206 kb on + strand, within BPHYT_RS02320 at 532.207 kb on - strand, within BPHYT_RS02320 at 532.314 kb on - strand, within BPHYT_RS02320 at 532.329 kb on - strand, within BPHYT_RS02320 at 532.433 kb on + strand at 532.434 kb on - strand at 532.434 kb on - strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.549 kb on + strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.550 kb on - strand at 532.551 kb on + strand at 532.552 kb on - strand at 532.674 kb on + strand at 532.737 kb on + strand at 533.058 kb on + strand, within BPHYT_RS02325 at 533.100 kb on + strand, within BPHYT_RS02325 at 533.101 kb on - strand, within BPHYT_RS02325 at 533.103 kb on - strand, within BPHYT_RS02325 at 533.103 kb on - strand, within BPHYT_RS02325 at 533.122 kb on + strand, within BPHYT_RS02325 at 533.122 kb on + strand, within BPHYT_RS02325 at 533.182 kb on + strand, within BPHYT_RS02325 at 533.322 kb on - strand, within BPHYT_RS02325 at 533.369 kb on + strand, within BPHYT_RS02325 at 533.370 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.427 kb on - strand, within BPHYT_RS02325 at 533.745 kb on + strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 533.746 kb on - strand, within BPHYT_RS02325 at 534.048 kb on + strand at 534.049 kb on - strand at 534.065 kb on - strand at 534.263 kb on + strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.264 kb on - strand at 534.265 kb on + strand at 534.266 kb on - strand at 534.277 kb on + strand at 534.277 kb on + strand at 534.278 kb on - strand at 534.335 kb on + strand, within BPHYT_RS02330 at 534.586 kb on + strand, within BPHYT_RS02330 at 534.587 kb on - strand, within BPHYT_RS02330 at 534.895 kb on + strand, within BPHYT_RS02330 at 534.896 kb on - strand, within BPHYT_RS02330
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 531,680 + +0.3 531,796 + BPHYT_RS02320 0.15 +0.1 531,797 - BPHYT_RS02320 0.15 -0.5 531,797 - BPHYT_RS02320 0.15 +0.4 531,807 + BPHYT_RS02320 0.16 +1.6 531,807 + BPHYT_RS02320 0.16 -0.7 531,808 - BPHYT_RS02320 0.16 +0.6 531,808 - BPHYT_RS02320 0.16 +0.5 531,808 - BPHYT_RS02320 0.16 +0.0 531,879 + BPHYT_RS02320 0.25 -0.1 531,880 - BPHYT_RS02320 0.25 -0.0 531,886 + BPHYT_RS02320 0.26 -0.3 531,886 + BPHYT_RS02320 0.26 -0.7 531,886 + BPHYT_RS02320 0.26 +1.0 531,923 + BPHYT_RS02320 0.31 +0.2 531,924 - BPHYT_RS02320 0.31 +0.4 531,949 + BPHYT_RS02320 0.34 +0.4 531,949 + BPHYT_RS02320 0.34 +0.1 532,206 + BPHYT_RS02320 0.67 -0.3 532,207 - BPHYT_RS02320 0.67 -0.6 532,314 - BPHYT_RS02320 0.80 +1.6 532,329 - BPHYT_RS02320 0.82 +0.1 532,433 + -0.5 532,434 - +0.7 532,434 - -1.1 532,549 + +0.0 532,549 + +0.0 532,549 + -1.3 532,550 - +0.4 532,550 - -0.6 532,550 - -0.8 532,551 + -1.2 532,552 - -1.3 532,674 + +0.5 532,737 + -0.8 533,058 + BPHYT_RS02325 0.31 +0.7 533,100 + BPHYT_RS02325 0.34 +0.5 533,101 - BPHYT_RS02325 0.34 +1.5 533,103 - BPHYT_RS02325 0.35 +0.4 533,103 - BPHYT_RS02325 0.35 -1.0 533,122 + BPHYT_RS02325 0.36 -0.3 533,122 + BPHYT_RS02325 0.36 -2.1 533,182 + BPHYT_RS02325 0.41 -0.1 533,322 - BPHYT_RS02325 0.51 +1.0 533,369 + BPHYT_RS02325 0.55 +1.8 533,370 - BPHYT_RS02325 0.55 -0.6 533,427 - BPHYT_RS02325 0.59 +0.5 533,427 - BPHYT_RS02325 0.59 +0.6 533,745 + BPHYT_RS02325 0.84 +0.5 533,746 - BPHYT_RS02325 0.84 +1.0 533,746 - BPHYT_RS02325 0.84 +0.2 534,048 + +5.3 534,049 - -0.5 534,065 - -1.0 534,263 + +0.5 534,264 - +0.0 534,264 - +0.4 534,264 - +0.5 534,265 + -2.2 534,266 - +0.1 534,277 + -1.5 534,277 + -0.5 534,278 - -0.5 534,335 + BPHYT_RS02330 0.11 -1.5 534,586 + BPHYT_RS02330 0.38 -0.1 534,587 - BPHYT_RS02330 0.38 -0.8 534,895 + BPHYT_RS02330 0.73 -0.4 534,896 - BPHYT_RS02330 0.73 -1.2
Or see this region's nucleotide sequence