Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01740 and BPHYT_RS01745 overlap by 28 nucleotides BPHYT_RS01745 and BPHYT_RS01750 overlap by 10 nucleotides
BPHYT_RS01740: BPHYT_RS01740 - hypothetical protein, at 396,373 to 397,395
_RS01740
BPHYT_RS01745: BPHYT_RS01745 - carbon monoxide dehydrogenase subunit G, at 397,368 to 397,964
_RS01745
BPHYT_RS01750: BPHYT_RS01750 - von Willebrand factor A, at 397,955 to 399,241
_RS01750
Position (kb) 397
398 Strain fitness (log2 ratio) -1
0
1
2
3 at 396.531 kb on - strand, within BPHYT_RS01740 at 396.567 kb on + strand, within BPHYT_RS01740 at 396.641 kb on + strand, within BPHYT_RS01740 at 396.642 kb on - strand at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.766 kb on - strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.806 kb on + strand, within BPHYT_RS01740 at 396.839 kb on + strand, within BPHYT_RS01740 at 397.037 kb on - strand, within BPHYT_RS01740 at 397.324 kb on + strand at 397.325 kb on - strand at 397.327 kb on + strand at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.457 kb on + strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.458 kb on - strand, within BPHYT_RS01745 at 397.744 kb on + strand, within BPHYT_RS01745 at 397.835 kb on - strand, within BPHYT_RS01745 at 398.058 kb on - strand at 398.062 kb on + strand at 398.062 kb on + strand at 398.063 kb on - strand at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.160 kb on - strand, within BPHYT_RS01750 at 398.475 kb on + strand, within BPHYT_RS01750 at 398.494 kb on - strand, within BPHYT_RS01750 at 398.563 kb on - strand, within BPHYT_RS01750 at 398.756 kb on + strand, within BPHYT_RS01750 at 398.827 kb on + strand, within BPHYT_RS01750 at 398.828 kb on - strand, within BPHYT_RS01750
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 396,531 - BPHYT_RS01740 0.15 +0.4 396,567 + BPHYT_RS01740 0.19 +0.0 396,641 + BPHYT_RS01740 0.26 -1.0 396,642 - +0.7 396,766 - BPHYT_RS01740 0.38 -1.0 396,766 - BPHYT_RS01740 0.38 +1.2 396,766 - BPHYT_RS01740 0.38 -0.4 396,806 + BPHYT_RS01740 0.42 -0.4 396,806 + BPHYT_RS01740 0.42 -0.1 396,839 + BPHYT_RS01740 0.46 -1.1 397,037 - BPHYT_RS01740 0.65 -0.7 397,324 + -0.2 397,325 - +1.4 397,327 + -0.4 397,457 + BPHYT_RS01745 0.15 +0.9 397,457 + BPHYT_RS01745 0.15 +3.4 397,457 + BPHYT_RS01745 0.15 -0.4 397,458 - BPHYT_RS01745 0.15 -1.3 397,458 - BPHYT_RS01745 0.15 -1.5 397,458 - BPHYT_RS01745 0.15 -1.6 397,744 + BPHYT_RS01745 0.63 +0.8 397,835 - BPHYT_RS01745 0.78 +0.1 398,058 - -0.4 398,062 + +0.5 398,062 + -0.7 398,063 - +1.0 398,160 - BPHYT_RS01750 0.16 +0.7 398,160 - BPHYT_RS01750 0.16 -0.5 398,160 - BPHYT_RS01750 0.16 -0.3 398,475 + BPHYT_RS01750 0.40 -0.2 398,494 - BPHYT_RS01750 0.42 -0.2 398,563 - BPHYT_RS01750 0.47 -0.5 398,756 + BPHYT_RS01750 0.62 +0.5 398,827 + BPHYT_RS01750 0.68 -1.4 398,828 - BPHYT_RS01750 0.68 +0.3
Or see this region's nucleotide sequence