Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01435

Experiment: 36hr PHYTO4 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01430 and BPHYT_RS01435 are separated by 340 nucleotidesBPHYT_RS01435 and BPHYT_RS01440 are separated by 160 nucleotides BPHYT_RS01430: BPHYT_RS01430 - phosphoenolpyruvate carboxykinase, at 324,858 to 326,714 _RS01430 BPHYT_RS01435: BPHYT_RS01435 - LysR family transcriptional regulator, at 327,055 to 328,158 _RS01435 BPHYT_RS01440: BPHYT_RS01440 - DNA topoisomerase III, at 328,319 to 330,988 _RS01440 Position (kb) 327 328 329Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.199 kb on + strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.200 kb on - strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.313 kb on + strand, within BPHYT_RS01430at 326.526 kb on + strand, within BPHYT_RS01430at 326.527 kb on - strand, within BPHYT_RS01430at 326.762 kb on + strandat 326.763 kb on - strandat 326.908 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.938 kb on + strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.939 kb on - strandat 326.982 kb on + strandat 326.982 kb on + strandat 326.983 kb on - strandat 326.983 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.035 kb on - strandat 327.135 kb on + strandat 327.135 kb on + strandat 327.136 kb on - strandat 327.136 kb on - strandat 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.185 kb on + strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.186 kb on - strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.189 kb on + strand, within BPHYT_RS01435at 327.190 kb on - strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.247 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.394 kb on + strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strand, within BPHYT_RS01435at 327.395 kb on - strandat 327.513 kb on + strandat 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.513 kb on + strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.514 kb on - strand, within BPHYT_RS01435at 327.568 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435at 327.643 kb on + strand, within BPHYT_RS01435at 327.723 kb on + strand, within BPHYT_RS01435at 327.723 kb on + strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.724 kb on - strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.781 kb on + strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.782 kb on - strand, within BPHYT_RS01435at 327.836 kb on - strand, within BPHYT_RS01435at 327.949 kb on - strand, within BPHYT_RS01435at 328.089 kb on - strandat 328.089 kb on - strandat 328.101 kb on + strandat 328.102 kb on - strandat 328.102 kb on - strandat 328.145 kb on + strandat 328.146 kb on - strandat 328.146 kb on - strandat 328.156 kb on + strandat 328.157 kb on - strandat 328.157 kb on - strandat 328.234 kb on - strandat 328.756 kb on - strand, within BPHYT_RS01440

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1
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326,199 + BPHYT_RS01430 0.72 +1.7
326,199 + BPHYT_RS01430 0.72 -1.3
326,199 + BPHYT_RS01430 0.72 -0.0
326,200 - BPHYT_RS01430 0.72 +0.5
326,200 - BPHYT_RS01430 0.72 -0.7
326,200 - BPHYT_RS01430 0.72 -0.1
326,200 - BPHYT_RS01430 0.72 -0.1
326,200 - BPHYT_RS01430 0.72 -0.5
326,313 + BPHYT_RS01430 0.78 +0.7
326,313 + BPHYT_RS01430 0.78 -0.4
326,526 + BPHYT_RS01430 0.90 -1.2
326,527 - BPHYT_RS01430 0.90 +1.1
326,762 + +0.2
326,763 - +0.4
326,908 + +0.5
326,938 + -2.3
326,938 + -1.2
326,938 + -0.8
326,939 - +2.2
326,939 - +2.2
326,939 - +2.4
326,982 + +0.6
326,982 + -0.0
326,983 - +2.5
326,983 - +1.9
327,035 - +2.4
327,035 - +2.0
327,035 - +3.5
327,135 + +2.0
327,135 + +1.9
327,136 - +2.5
327,136 - +1.9
327,185 + BPHYT_RS01435 0.12 +2.0
327,185 + BPHYT_RS01435 0.12 +1.8
327,185 + BPHYT_RS01435 0.12 +2.5
327,185 + BPHYT_RS01435 0.12 +1.9
327,185 + BPHYT_RS01435 0.12 +2.6
327,185 + BPHYT_RS01435 0.12 +2.5
327,185 + BPHYT_RS01435 0.12 +2.5
327,185 + BPHYT_RS01435 0.12 +2.0
327,186 - BPHYT_RS01435 0.12 +2.0
327,186 - BPHYT_RS01435 0.12 +2.4
327,186 - BPHYT_RS01435 0.12 +2.4
327,189 + BPHYT_RS01435 0.12 +2.6
327,189 + BPHYT_RS01435 0.12 +2.6
327,190 - BPHYT_RS01435 0.12 +2.4
327,247 + BPHYT_RS01435 0.17 +1.9
327,247 + BPHYT_RS01435 0.17 +2.1
327,247 + BPHYT_RS01435 0.17 +2.7
327,247 + BPHYT_RS01435 0.17 +2.6
327,394 + BPHYT_RS01435 0.31 +2.0
327,394 + BPHYT_RS01435 0.31 +2.6
327,394 + BPHYT_RS01435 0.31 +2.0
327,395 - BPHYT_RS01435 0.31 +1.5
327,395 - BPHYT_RS01435 0.31 +2.0
327,395 - +2.4
327,513 + +1.1
327,513 + BPHYT_RS01435 0.41 +2.6
327,513 + BPHYT_RS01435 0.41 +2.1
327,513 + BPHYT_RS01435 0.41 +2.5
327,513 + BPHYT_RS01435 0.41 +1.9
327,514 - BPHYT_RS01435 0.42 +1.7
327,514 - BPHYT_RS01435 0.42 +2.4
327,514 - BPHYT_RS01435 0.42 +1.9
327,568 + BPHYT_RS01435 0.46 +2.0
327,643 + BPHYT_RS01435 0.53 +2.0
327,643 + BPHYT_RS01435 0.53 +2.5
327,723 + BPHYT_RS01435 0.61 +2.1
327,723 + BPHYT_RS01435 0.61 +2.7
327,724 - BPHYT_RS01435 0.61 +2.4
327,724 - BPHYT_RS01435 0.61 +2.5
327,724 - BPHYT_RS01435 0.61 +2.5
327,724 - BPHYT_RS01435 0.61 +2.7
327,724 - BPHYT_RS01435 0.61 +2.4
327,724 - BPHYT_RS01435 0.61 +1.9
327,781 + BPHYT_RS01435 0.66 +4.2
327,781 + BPHYT_RS01435 0.66 +1.9
327,781 + BPHYT_RS01435 0.66 +2.0
327,781 + BPHYT_RS01435 0.66 +2.0
327,782 - BPHYT_RS01435 0.66 +1.8
327,782 - BPHYT_RS01435 0.66 +2.4
327,782 - BPHYT_RS01435 0.66 +2.5
327,836 - BPHYT_RS01435 0.71 +1.9
327,949 - BPHYT_RS01435 0.81 +2.7
328,089 - +4.1
328,089 - +3.5
328,101 + +2.7
328,102 - +0.1
328,102 - -0.3
328,145 + -0.1
328,146 - +3.3
328,146 - +3.1
328,156 + -0.3
328,157 - -0.2
328,157 - +0.4
328,234 - +1.7
328,756 - BPHYT_RS01440 0.16 +2.7

Or see this region's nucleotide sequence