Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01250 and BPHYT_RS01255 are separated by 285 nucleotides BPHYT_RS01255 and BPHYT_RS01260 are separated by 215 nucleotides BPHYT_RS01260 and BPHYT_RS01265 are separated by 38 nucleotides
BPHYT_RS01250: BPHYT_RS01250 - integrase, at 286,317 to 287,315
_RS01250
BPHYT_RS01255: BPHYT_RS01255 - AsnC family transcriptional regulator, at 287,601 to 288,062
_RS01255
BPHYT_RS01260: BPHYT_RS01260 - hypothetical protein, at 288,278 to 289,408
_RS01260
BPHYT_RS01265: BPHYT_RS01265 - lysine transporter LysE, at 289,447 to 290,061
_RS01265
Position (kb)
288
289
290 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 287.533 kb on - strand at 287.652 kb on - strand, within BPHYT_RS01255 at 287.717 kb on - strand, within BPHYT_RS01255 at 287.717 kb on - strand, within BPHYT_RS01255 at 287.756 kb on - strand, within BPHYT_RS01255 at 287.852 kb on - strand, within BPHYT_RS01255 at 287.973 kb on + strand, within BPHYT_RS01255 at 288.074 kb on + strand at 288.075 kb on - strand at 288.142 kb on - strand at 288.142 kb on - strand at 288.175 kb on + strand at 288.301 kb on + strand at 288.301 kb on + strand at 288.301 kb on + strand at 288.302 kb on - strand at 288.360 kb on + strand at 288.398 kb on + strand, within BPHYT_RS01260 at 288.446 kb on + strand, within BPHYT_RS01260 at 288.569 kb on + strand, within BPHYT_RS01260 at 288.724 kb on - strand, within BPHYT_RS01260 at 288.725 kb on + strand, within BPHYT_RS01260 at 288.986 kb on + strand, within BPHYT_RS01260 at 288.987 kb on - strand, within BPHYT_RS01260 at 289.058 kb on + strand, within BPHYT_RS01260 at 289.059 kb on - strand, within BPHYT_RS01260 at 289.074 kb on - strand, within BPHYT_RS01260 at 289.075 kb on + strand, within BPHYT_RS01260 at 289.075 kb on + strand, within BPHYT_RS01260 at 289.159 kb on + strand, within BPHYT_RS01260 at 289.159 kb on + strand, within BPHYT_RS01260 at 289.159 kb on + strand, within BPHYT_RS01260 at 289.159 kb on + strand, within BPHYT_RS01260 at 289.160 kb on - strand, within BPHYT_RS01260 at 289.373 kb on + strand at 289.374 kb on - strand at 289.418 kb on + strand at 289.434 kb on - strand at 289.435 kb on + strand at 289.436 kb on - strand at 289.446 kb on + strand at 289.446 kb on + strand at 289.446 kb on + strand at 289.447 kb on - strand at 289.447 kb on - strand at 289.571 kb on + strand, within BPHYT_RS01265 at 289.704 kb on - strand, within BPHYT_RS01265 at 289.708 kb on + strand, within BPHYT_RS01265 at 289.709 kb on - strand, within BPHYT_RS01265 at 289.810 kb on - strand, within BPHYT_RS01265 at 290.081 kb on + strand at 290.150 kb on + strand at 290.217 kb on + strand at 290.217 kb on + strand at 290.255 kb on + strand at 290.348 kb on - strand at 290.360 kb on - strand at 290.360 kb on - strand at 290.360 kb on - strand at 290.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 287,533 - -0.5 287,652 - BPHYT_RS01255 0.11 -0.4 287,717 - BPHYT_RS01255 0.25 +1.0 287,717 - BPHYT_RS01255 0.25 +0.3 287,756 - BPHYT_RS01255 0.34 -2.7 287,852 - BPHYT_RS01255 0.54 -1.0 287,973 + BPHYT_RS01255 0.81 +0.1 288,074 + -0.6 288,075 - -0.5 288,142 - -0.3 288,142 - -0.4 288,175 + +0.2 288,301 + +0.7 288,301 + -1.1 288,301 + +0.5 288,302 - -0.2 288,360 + +0.3 288,398 + BPHYT_RS01260 0.11 -0.0 288,446 + BPHYT_RS01260 0.15 -0.1 288,569 + BPHYT_RS01260 0.26 -0.3 288,724 - BPHYT_RS01260 0.39 +0.4 288,725 + BPHYT_RS01260 0.40 -1.7 288,986 + BPHYT_RS01260 0.63 -0.6 288,987 - BPHYT_RS01260 0.63 +0.2 289,058 + BPHYT_RS01260 0.69 +0.4 289,059 - BPHYT_RS01260 0.69 -0.1 289,074 - BPHYT_RS01260 0.70 -0.6 289,075 + BPHYT_RS01260 0.70 -1.1 289,075 + BPHYT_RS01260 0.70 -0.2 289,159 + BPHYT_RS01260 0.78 -0.9 289,159 + BPHYT_RS01260 0.78 +3.3 289,159 + BPHYT_RS01260 0.78 -2.0 289,159 + BPHYT_RS01260 0.78 -0.9 289,160 - BPHYT_RS01260 0.78 -0.6 289,373 + +0.4 289,374 - +0.0 289,418 + -1.5 289,434 - -0.4 289,435 + +0.9 289,436 - -0.1 289,446 + +0.0 289,446 + +0.1 289,446 + +0.1 289,447 - +0.9 289,447 - -0.6 289,571 + BPHYT_RS01265 0.20 +0.2 289,704 - BPHYT_RS01265 0.42 +1.4 289,708 + BPHYT_RS01265 0.42 -2.3 289,709 - BPHYT_RS01265 0.43 -1.1 289,810 - BPHYT_RS01265 0.59 -0.9 290,081 + -1.1 290,150 + +0.0 290,217 + +1.0 290,217 + +0.6 290,255 + -2.6 290,348 - +0.2 290,360 - +0.3 290,360 - +0.1 290,360 - -1.8 290,388 - -0.6
Or see this region's nucleotide sequence