Experiment: 36hr PHYTO4 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00885 and BPHYT_RS00890 are separated by 724 nucleotides BPHYT_RS00890 and BPHYT_RS00895 are separated by 236 nucleotides
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
BPHYT_RS00890: BPHYT_RS00890 - membrane protein, at 204,111 to 205,199
_RS00890
BPHYT_RS00895: BPHYT_RS00895 - MFS transporter, at 205,436 to 206,818
_RS00895
Position (kb) 204
205
206 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885 at 203.341 kb on + strand at 203.364 kb on - strand at 203.705 kb on + strand at 203.705 kb on + strand at 203.706 kb on - strand at 203.728 kb on + strand at 203.793 kb on - strand at 203.858 kb on - strand at 203.870 kb on + strand at 203.871 kb on - strand at 203.872 kb on + strand at 203.994 kb on - strand at 203.994 kb on - strand at 204.054 kb on + strand at 204.054 kb on + strand at 204.055 kb on - strand at 204.055 kb on - strand at 204.157 kb on + strand at 204.227 kb on - strand, within BPHYT_RS00890 at 204.268 kb on + strand, within BPHYT_RS00890 at 204.374 kb on - strand, within BPHYT_RS00890 at 204.436 kb on + strand, within BPHYT_RS00890 at 204.586 kb on + strand, within BPHYT_RS00890 at 204.620 kb on - strand, within BPHYT_RS00890 at 204.647 kb on - strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.654 kb on + strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.655 kb on - strand, within BPHYT_RS00890 at 204.683 kb on - strand, within BPHYT_RS00890 at 204.794 kb on - strand, within BPHYT_RS00890 at 204.810 kb on + strand, within BPHYT_RS00890 at 204.991 kb on - strand, within BPHYT_RS00890 at 205.023 kb on - strand, within BPHYT_RS00890 at 205.247 kb on + strand at 205.675 kb on + strand, within BPHYT_RS00895 at 205.717 kb on - strand, within BPHYT_RS00895 at 205.747 kb on - strand, within BPHYT_RS00895 at 205.759 kb on + strand, within BPHYT_RS00895 at 205.935 kb on + strand, within BPHYT_RS00895 at 206.014 kb on - strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895 at 206.193 kb on + strand, within BPHYT_RS00895
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO4 MOI 1 remove 203,234 + BPHYT_RS00885 0.86 -0.7 203,270 + BPHYT_RS00885 0.89 -1.2 203,341 + +0.3 203,364 - -0.6 203,705 + +0.5 203,705 + +0.6 203,706 - +0.5 203,728 + -0.2 203,793 - -2.0 203,858 - -0.5 203,870 + -1.5 203,871 - -2.3 203,872 + +1.3 203,994 - +0.1 203,994 - +1.8 204,054 + -0.3 204,054 + -1.0 204,055 - +1.5 204,055 - +1.1 204,157 + +0.9 204,227 - BPHYT_RS00890 0.11 -0.1 204,268 + BPHYT_RS00890 0.14 -0.7 204,374 - BPHYT_RS00890 0.24 +0.5 204,436 + BPHYT_RS00890 0.30 +0.2 204,586 + BPHYT_RS00890 0.44 +0.0 204,620 - BPHYT_RS00890 0.47 -0.8 204,647 - BPHYT_RS00890 0.49 -0.5 204,654 + BPHYT_RS00890 0.50 +0.1 204,654 + BPHYT_RS00890 0.50 -0.1 204,654 + BPHYT_RS00890 0.50 +0.0 204,654 + BPHYT_RS00890 0.50 +0.9 204,655 - BPHYT_RS00890 0.50 -0.8 204,655 - BPHYT_RS00890 0.50 -0.2 204,655 - BPHYT_RS00890 0.50 -0.9 204,683 - BPHYT_RS00890 0.53 +0.1 204,794 - BPHYT_RS00890 0.63 +1.4 204,810 + BPHYT_RS00890 0.64 -0.0 204,991 - BPHYT_RS00890 0.81 +0.8 205,023 - BPHYT_RS00890 0.84 -0.6 205,247 + +0.1 205,675 + BPHYT_RS00895 0.17 +0.7 205,717 - BPHYT_RS00895 0.20 -1.5 205,747 - BPHYT_RS00895 0.22 +5.7 205,759 + BPHYT_RS00895 0.23 -2.1 205,935 + BPHYT_RS00895 0.36 -1.1 206,014 - BPHYT_RS00895 0.42 +0.1 206,193 + BPHYT_RS00895 0.55 +0.1 206,193 + BPHYT_RS00895 0.55 +0.7
Or see this region's nucleotide sequence