Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11135

Experiment: 36hr PHYTO3 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS11130 and BPHYT_RS11135 are separated by 325 nucleotidesBPHYT_RS11135 and BPHYT_RS11140 are separated by 169 nucleotides BPHYT_RS11130: BPHYT_RS11130 - chemotaxis protein, at 2,528,695 to 2,530,269 _RS11130 BPHYT_RS11135: BPHYT_RS11135 - LysR family transcriptional regulator, at 2,530,595 to 2,531,455 _RS11135 BPHYT_RS11140: BPHYT_RS11140 - major facilitator transporter, at 2,531,625 to 2,533,025 _RS11140 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -1 0 1at 2529.985 kb on - strand, within BPHYT_RS11130at 2530.311 kb on - strandat 2530.311 kb on - strandat 2530.354 kb on + strandat 2530.549 kb on + strandat 2531.537 kb on + strandat 2531.538 kb on - strandat 2531.742 kb on + strandat 2531.909 kb on + strand, within BPHYT_RS11140at 2531.910 kb on - strand, within BPHYT_RS11140at 2532.156 kb on + strand, within BPHYT_RS11140

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 0.1
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2,529,985 - BPHYT_RS11130 0.82 -1.2
2,530,311 - +0.2
2,530,311 - -0.2
2,530,354 + -1.0
2,530,549 + -0.1
2,531,537 + -0.2
2,531,538 - -0.4
2,531,742 + -0.2
2,531,909 + BPHYT_RS11140 0.20 +0.0
2,531,910 - BPHYT_RS11140 0.20 -1.5
2,532,156 + BPHYT_RS11140 0.38 -0.4

Or see this region's nucleotide sequence