Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36440 and BPHYT_RS36445 are separated by 163 nucleotides BPHYT_RS36445 and BPHYT_RS36450 are separated by 39 nucleotides BPHYT_RS36450 and BPHYT_RS36455 are separated by 0 nucleotides BPHYT_RS36455 and BPHYT_RS36460 are separated by 12 nucleotides BPHYT_RS36460 and BPHYT_RS36465 are separated by 58 nucleotides
BPHYT_RS36440: BPHYT_RS36440 - hypothetical protein, at 100,591 to 100,908
_RS36440
BPHYT_RS36445: BPHYT_RS36445 - hypothetical protein, at 101,072 to 101,320
_RS36445
BPHYT_RS36450: BPHYT_RS36450 - hypothetical protein, at 101,360 to 102,559
_RS36450
BPHYT_RS36455: BPHYT_RS36455 - hypothetical protein, at 102,560 to 102,778
_RS36455
BPHYT_RS36460: BPHYT_RS36460 - hypothetical protein, at 102,791 to 103,294
_RS36460
BPHYT_RS36465: BPHYT_RS36465 - DNA-binding protein, at 103,353 to 103,673
_RS36465
Position (kb) 101
102
103 Strain fitness (log2 ratio) -1
0
1
2
3 at 100.402 kb on + strand at 100.778 kb on - strand, within BPHYT_RS36440 at 100.781 kb on - strand, within BPHYT_RS36440 at 100.823 kb on - strand, within BPHYT_RS36440 at 100.956 kb on - strand at 100.956 kb on - strand at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.558 kb on - strand, within BPHYT_RS36450 at 101.636 kb on - strand, within BPHYT_RS36450 at 102.024 kb on - strand, within BPHYT_RS36450 at 102.029 kb on - strand, within BPHYT_RS36450 at 102.189 kb on + strand, within BPHYT_RS36450 at 102.558 kb on - strand at 102.741 kb on - strand, within BPHYT_RS36455 at 102.816 kb on - strand at 102.841 kb on - strand at 103.020 kb on - strand, within BPHYT_RS36460 at 103.023 kb on - strand, within BPHYT_RS36460 at 103.261 kb on - strand at 103.261 kb on - strand at 103.293 kb on - strand at 103.322 kb on - strand at 103.482 kb on + strand, within BPHYT_RS36465
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 100,402 + -1.2 100,778 - BPHYT_RS36440 0.59 -0.4 100,781 - BPHYT_RS36440 0.60 +2.9 100,823 - BPHYT_RS36440 0.73 +1.4 100,956 - +0.3 100,956 - -0.2 101,558 - BPHYT_RS36450 0.17 +1.1 101,558 - BPHYT_RS36450 0.17 -0.1 101,558 - BPHYT_RS36450 0.17 -1.2 101,558 - BPHYT_RS36450 0.17 -0.0 101,636 - BPHYT_RS36450 0.23 +1.2 102,024 - BPHYT_RS36450 0.55 -0.4 102,029 - BPHYT_RS36450 0.56 +0.2 102,189 + BPHYT_RS36450 0.69 +1.9 102,558 - +0.3 102,741 - BPHYT_RS36455 0.83 +0.8 102,816 - +0.2 102,841 - +1.1 103,020 - BPHYT_RS36460 0.45 +0.7 103,023 - BPHYT_RS36460 0.46 +0.0 103,261 - +0.9 103,261 - +0.3 103,293 - +0.3 103,322 - +0.3 103,482 + BPHYT_RS36465 0.40 +1.9
Or see this region's nucleotide sequence