Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33820

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
3,179,067	-		BPHYT_RS33815	0.33	-1.5
3,179,067	-		BPHYT_RS33815	0.33	-1.3
3,179,067	-		BPHYT_RS33815	0.33	-1.3
3,179,432	+		BPHYT_RS33815	0.60	-0.3
3,179,520	-		BPHYT_RS33815	0.66	-0.4
3,179,541	-		BPHYT_RS33815	0.68	-1.3
3,180,006	-				-0.2
3,180,006	-				+0.2
3,180,006	-				-0.8
3,180,006	-				-0.2
3,180,007	+				-0.2
3,180,008	-				-1.1
3,180,008	-				-1.2
3,180,008	-				-1.3
3,180,315	-		BPHYT_RS33820	0.30	+3.0
3,180,542	-		BPHYT_RS33820	0.58	+2.8
3,180,542	-		BPHYT_RS33820	0.58	+3.2
3,180,567	-		BPHYT_RS33820	0.61	+3.1
3,180,600	+		BPHYT_RS33820	0.65	+2.9
3,180,678	+		BPHYT_RS33820	0.74	+2.8
3,180,713	+				+3.1
3,180,713	+		BPHYT_RS33820	0.79	+3.1
3,180,714	-		BPHYT_RS33820	0.79	+3.2
3,180,714	-		BPHYT_RS33820	0.79	+3.1
3,180,723	+		BPHYT_RS33820	0.80	+3.2
3,180,723	+		BPHYT_RS33820	0.80	+2.9
3,180,723	+		BPHYT_RS33820	0.80	+3.1
3,180,723	+		BPHYT_RS33820	0.80	+3.0
3,180,723	+		BPHYT_RS33820	0.80	+2.7
3,180,724	-		BPHYT_RS33820	0.80	+3.2
3,180,724	-		BPHYT_RS33820	0.80	+2.9
3,180,724	-		BPHYT_RS33820	0.80	+2.9
3,180,935	+				-0.3
3,180,937	+				+0.5
3,181,035	+				-0.0
3,181,035	+				-0.3
3,181,035	+				-0.3
3,181,035	+				-0.2
3,181,036	-				+0.9
3,181,050	+				+0.0
3,181,074	+				-1.3
3,181,074	+				-0.6
3,181,074	+				+0.4
3,181,074	+				+0.3
3,181,074	+				-2.8
3,181,075	-				+0.6
3,181,075	-				+1.2
3,181,075	-				+1.5
3,181,075	-				+1.1
3,181,075	-				+0.9
3,181,075	-				+0.9
3,181,109	-				+1.6
3,181,171	+		BPHYT_RS33825	0.28	-0.3
3,181,171	+		BPHYT_RS33825	0.28	-0.7
3,181,171	+		BPHYT_RS33825	0.28	-0.1
3,181,172	-		BPHYT_RS33825	0.28	-0.0
3,181,380	+		BPHYT_RS33825	0.89	-0.5
3,181,476	-				+0.0