Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29620

Experiment: 36hr PHYTO3 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO3 MOI 1
2,198,919	+		BPHYT_RS29610	0.64	-1.2
2,198,920	-		BPHYT_RS29610	0.64	-1.0
2,198,922	-		BPHYT_RS29610	0.65	-0.4
2,199,133	+				-1.0
2,199,133	+				-0.1
2,199,135	+				-0.2
2,199,136	-				-0.6
2,199,217	-				+0.6
2,199,218	+				+1.3
2,199,219	-				-0.1
2,199,219	-				+0.0
2,199,251	-				-0.7
2,199,251	-				+0.2
2,199,307	+				-0.2
2,199,308	-				+0.7
2,199,574	+				-0.3
2,199,575	-				+0.0
2,199,689	+				-0.1
2,199,689	+				-1.2
2,199,690	-				-0.3
2,199,898	+				-0.3
2,199,898	+				+1.6
2,200,130	+		BPHYT_RS29620	0.73	+0.8
2,200,219	+				+0.5
2,200,220	-				+0.2
2,200,256	+				-0.1
2,200,257	-				-0.3
2,200,278	+				+0.1
2,200,279	-				+0.2
2,200,286	+				+2.2
2,200,352	-				+0.3
2,200,451	-				+3.5
2,200,532	+				+0.7
2,200,532	+				+0.1
2,200,712	-		BPHYT_RS29625	0.16	+0.5
2,200,712	-		BPHYT_RS29625	0.16	-0.7
2,200,751	+		BPHYT_RS29625	0.19	+1.1
2,200,751	+		BPHYT_RS29625	0.19	-0.2
2,200,752	-		BPHYT_RS29625	0.19	+0.2
2,200,752	-		BPHYT_RS29625	0.19	+0.3
2,200,752	-		BPHYT_RS29625	0.19	+0.5
2,200,793	+		BPHYT_RS29625	0.22	+0.1
2,200,793	+		BPHYT_RS29625	0.22	+0.0
2,200,794	-		BPHYT_RS29625	0.22	-1.8
2,200,846	+		BPHYT_RS29625	0.26	+0.2
2,200,846	+		BPHYT_RS29625	0.26	-1.0
2,200,847	-		BPHYT_RS29625	0.26	+0.5
2,200,847	-		BPHYT_RS29625	0.26	+1.0
2,201,204	-		BPHYT_RS29625	0.51	+1.8