Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26435

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26430 and BPHYT_RS26435 overlap by 41 nucleotidesBPHYT_RS26435 and BPHYT_RS26440 are separated by 631 nucleotides BPHYT_RS26430: BPHYT_RS26430 - diguanylate cyclase, at 1,501,275 to 1,502,420 _RS26430 BPHYT_RS26435: BPHYT_RS26435 - hypothetical protein, at 1,502,380 to 1,503,108 _RS26435 BPHYT_RS26440: BPHYT_RS26440 - NADH-flavin oxidoreductase / NADH oxidase, at 1,503,740 to 1,504,867 _RS26440 Position (kb) 1502 1503 1504Strain fitness (log2 ratio) -2 -1 0 1at 1501.404 kb on - strand, within BPHYT_RS26430at 1501.795 kb on + strand, within BPHYT_RS26430at 1501.831 kb on + strand, within BPHYT_RS26430at 1501.888 kb on - strand, within BPHYT_RS26430at 1502.216 kb on - strand, within BPHYT_RS26430at 1502.394 kb on - strandat 1502.942 kb on + strand, within BPHYT_RS26435at 1502.952 kb on + strand, within BPHYT_RS26435at 1503.104 kb on + strandat 1503.777 kb on - strandat 1503.941 kb on + strand, within BPHYT_RS26440

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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1,501,404 - BPHYT_RS26430 0.11 +0.9
1,501,795 + BPHYT_RS26430 0.45 +0.7
1,501,831 + BPHYT_RS26430 0.49 -0.7
1,501,888 - BPHYT_RS26430 0.53 -0.8
1,502,216 - BPHYT_RS26430 0.82 -0.3
1,502,394 - -2.7
1,502,942 + BPHYT_RS26435 0.77 -1.0
1,502,952 + BPHYT_RS26435 0.78 -0.2
1,503,104 + +0.4
1,503,777 - -1.1
1,503,941 + BPHYT_RS26440 0.18 -0.6

Or see this region's nucleotide sequence