Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23495

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23485 and BPHYT_RS23490 are separated by 105 nucleotidesBPHYT_RS23490 and BPHYT_RS23495 are separated by 214 nucleotidesBPHYT_RS23495 and BPHYT_RS23500 are separated by 134 nucleotides BPHYT_RS23485: BPHYT_RS23485 - glyoxalase, at 835,922 to 836,344 _RS23485 BPHYT_RS23490: BPHYT_RS23490 - hypothetical protein, at 836,450 to 836,752 _RS23490 BPHYT_RS23495: BPHYT_RS23495 - thioredoxin reductase, at 836,967 to 838,700 _RS23495 BPHYT_RS23500: BPHYT_RS23500 - hypothetical protein, at 838,835 to 840,013 _RS23500 Position (kb) 836 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2at 836.742 kb on - strandat 837.279 kb on + strand, within BPHYT_RS23495at 837.745 kb on - strand, within BPHYT_RS23495at 837.994 kb on - strand, within BPHYT_RS23495at 838.002 kb on - strand, within BPHYT_RS23495at 838.132 kb on - strand, within BPHYT_RS23495at 839.286 kb on + strand, within BPHYT_RS23500

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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836,742 - -0.4
837,279 + BPHYT_RS23495 0.18 -1.7
837,745 - BPHYT_RS23495 0.45 +1.8
837,994 - BPHYT_RS23495 0.59 +0.1
838,002 - BPHYT_RS23495 0.60 +1.0
838,132 - BPHYT_RS23495 0.67 -1.9
839,286 + BPHYT_RS23500 0.38 +0.5

Or see this region's nucleotide sequence