Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22900

Experiment: 36hr PHYTO3 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22890 and BPHYT_RS22895 are separated by 139 nucleotidesBPHYT_RS22895 and BPHYT_RS22900 are separated by 37 nucleotidesBPHYT_RS22900 and BPHYT_RS22905 are separated by 88 nucleotides BPHYT_RS22890: BPHYT_RS22890 - pilus assembly protein, at 695,754 to 695,930 _RS22890 BPHYT_RS22895: BPHYT_RS22895 - peptidase A24, at 696,070 to 696,606 _RS22895 BPHYT_RS22900: BPHYT_RS22900 - pilus assembly protein CpaB, at 696,644 to 697,477 _RS22900 BPHYT_RS22905: BPHYT_RS22905 - secretin, at 697,566 to 699,353 _RS22905 Position (kb) 696 697 698Strain fitness (log2 ratio) -1 0 1 2at 696.114 kb on - strandat 696.572 kb on + strandat 696.573 kb on - strandat 697.695 kb on + strandat 697.695 kb on + strandat 697.901 kb on + strand, within BPHYT_RS22905at 697.902 kb on - strand, within BPHYT_RS22905at 698.023 kb on - strand, within BPHYT_RS22905

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
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696,114 - +0.2
696,572 + -0.4
696,573 - -1.0
697,695 + +0.4
697,695 + -0.2
697,901 + BPHYT_RS22905 0.19 +2.7
697,902 - BPHYT_RS22905 0.19 +0.4
698,023 - BPHYT_RS22905 0.26 +0.0

Or see this region's nucleotide sequence