Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22060

Experiment: 36hr PHYTO3 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS22055 and BPHYT_RS22060 are separated by 923 nucleotidesBPHYT_RS22060 and BPHYT_RS22065 are separated by 218 nucleotides BPHYT_RS22055: BPHYT_RS22055 - DNA-binding protein, at 503,655 to 504,227 _RS22055 BPHYT_RS22060: BPHYT_RS22060 - amino acid transporter, at 505,151 to 506,692 _RS22060 BPHYT_RS22065: BPHYT_RS22065 - DNA-binding protein, at 506,911 to 508,383 _RS22065 Position (kb) 505 506 507Strain fitness (log2 ratio) -1 0 1 2 3 4at 504.193 kb on - strandat 504.263 kb on + strandat 504.264 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.266 kb on - strandat 504.270 kb on - strandat 504.270 kb on - strandat 504.274 kb on - strandat 504.358 kb on - strandat 504.358 kb on - strandat 504.441 kb on - strandat 504.494 kb on - strandat 504.544 kb on - strandat 504.812 kb on + strandat 504.813 kb on - strandat 504.813 kb on - strandat 504.813 kb on - strandat 505.145 kb on + strandat 505.146 kb on - strandat 505.146 kb on - strandat 505.242 kb on - strandat 505.472 kb on + strand, within BPHYT_RS22060at 505.472 kb on + strand, within BPHYT_RS22060at 505.473 kb on - strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.474 kb on + strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.475 kb on - strand, within BPHYT_RS22060at 505.478 kb on + strand, within BPHYT_RS22060at 505.478 kb on + strand, within BPHYT_RS22060at 505.479 kb on - strand, within BPHYT_RS22060at 505.479 kb on - strand, within BPHYT_RS22060at 505.553 kb on + strand, within BPHYT_RS22060at 505.554 kb on - strand, within BPHYT_RS22060at 505.554 kb on - strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.595 kb on + strand, within BPHYT_RS22060at 505.599 kb on - strand, within BPHYT_RS22060at 505.599 kb on - strand, within BPHYT_RS22060at 505.880 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.006 kb on + strand, within BPHYT_RS22060at 506.007 kb on - strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.165 kb on + strand, within BPHYT_RS22060at 506.213 kb on + strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.214 kb on - strand, within BPHYT_RS22060at 506.319 kb on - strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.327 kb on + strand, within BPHYT_RS22060at 506.382 kb on - strand, within BPHYT_RS22060at 506.420 kb on + strand, within BPHYT_RS22060at 506.525 kb on - strand, within BPHYT_RS22060at 506.690 kb on + strandat 506.690 kb on + strandat 506.740 kb on - strandat 506.831 kb on - strandat 506.850 kb on + strandat 506.851 kb on - strandat 506.963 kb on - strandat 507.103 kb on + strand, within BPHYT_RS22065at 507.103 kb on + strand, within BPHYT_RS22065at 507.589 kb on + strand, within BPHYT_RS22065

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1
remove
504,193 - +1.1
504,263 + +2.9
504,264 - -0.1
504,266 - +0.6
504,266 - +0.0
504,266 - -0.1
504,270 - +0.8
504,270 - -1.4
504,274 - +0.4
504,358 - +2.2
504,358 - -0.3
504,441 - +0.2
504,494 - -0.8
504,544 - -0.4
504,812 + -1.7
504,813 - -0.4
504,813 - +0.1
504,813 - +1.2
505,145 + +1.1
505,146 - +0.1
505,146 - +1.4
505,242 - +0.6
505,472 + BPHYT_RS22060 0.21 +0.3
505,472 + BPHYT_RS22060 0.21 -0.1
505,473 - BPHYT_RS22060 0.21 +0.9
505,474 + BPHYT_RS22060 0.21 +1.2
505,474 + BPHYT_RS22060 0.21 +0.7
505,474 + BPHYT_RS22060 0.21 +1.1
505,474 + BPHYT_RS22060 0.21 +0.6
505,475 - BPHYT_RS22060 0.21 +1.0
505,475 - BPHYT_RS22060 0.21 +1.3
505,475 - BPHYT_RS22060 0.21 +1.8
505,475 - BPHYT_RS22060 0.21 +0.1
505,475 - BPHYT_RS22060 0.21 +0.7
505,475 - BPHYT_RS22060 0.21 +1.5
505,475 - BPHYT_RS22060 0.21 +0.8
505,475 - BPHYT_RS22060 0.21 +1.0
505,478 + BPHYT_RS22060 0.21 +0.4
505,478 + BPHYT_RS22060 0.21 +0.9
505,479 - BPHYT_RS22060 0.21 +1.6
505,479 - BPHYT_RS22060 0.21 +1.1
505,553 + BPHYT_RS22060 0.26 +0.4
505,554 - BPHYT_RS22060 0.26 -0.0
505,554 - BPHYT_RS22060 0.26 +1.2
505,595 + BPHYT_RS22060 0.29 +1.3
505,595 + BPHYT_RS22060 0.29 +0.5
505,595 + BPHYT_RS22060 0.29 +0.4
505,599 - BPHYT_RS22060 0.29 +0.7
505,599 - BPHYT_RS22060 0.29 +1.2
505,880 + BPHYT_RS22060 0.47 +0.4
506,006 + BPHYT_RS22060 0.55 +0.3
506,006 + BPHYT_RS22060 0.55 +0.3
506,006 + BPHYT_RS22060 0.55 +1.2
506,006 + BPHYT_RS22060 0.55 +1.0
506,006 + BPHYT_RS22060 0.55 +1.0
506,006 + BPHYT_RS22060 0.55 +0.5
506,006 + BPHYT_RS22060 0.55 +1.0
506,006 + BPHYT_RS22060 0.55 +1.1
506,006 + BPHYT_RS22060 0.55 +1.2
506,007 - BPHYT_RS22060 0.56 +0.7
506,165 + BPHYT_RS22060 0.66 +1.2
506,165 + BPHYT_RS22060 0.66 +0.8
506,213 + BPHYT_RS22060 0.69 +1.0
506,214 - BPHYT_RS22060 0.69 +0.6
506,214 - BPHYT_RS22060 0.69 +0.8
506,214 - BPHYT_RS22060 0.69 +0.6
506,319 - BPHYT_RS22060 0.76 +1.2
506,327 + BPHYT_RS22060 0.76 +0.0
506,327 + BPHYT_RS22060 0.76 +0.6
506,382 - BPHYT_RS22060 0.80 +0.2
506,420 + BPHYT_RS22060 0.82 +1.2
506,525 - BPHYT_RS22060 0.89 +1.2
506,690 + +0.3
506,690 + +0.4
506,740 - +1.1
506,831 - +0.7
506,850 + +1.6
506,851 - +3.8
506,963 - +0.8
507,103 + BPHYT_RS22065 0.13 +0.2
507,103 + BPHYT_RS22065 0.13 +1.6
507,589 + BPHYT_RS22065 0.46 -0.4

Or see this region's nucleotide sequence