Experiment: 36hr PHYTO3 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21900 and BPHYT_RS21905 are separated by 187 nucleotides BPHYT_RS21905 and BPHYT_RS21910 are separated by 75 nucleotides BPHYT_RS21910 and BPHYT_RS21915 are separated by 17 nucleotides
BPHYT_RS21900: BPHYT_RS21900 - transglutaminase, at 472,018 to 472,908
_RS21900
BPHYT_RS21905: BPHYT_RS21905 - IclR family transcriptional regulator, at 473,096 to 473,845
_RS21905
BPHYT_RS21910: BPHYT_RS21910 - ABC transporter permease, at 473,921 to 474,676
_RS21910
BPHYT_RS21915: BPHYT_RS21915 - ABC transporter permease, at 474,694 to 475,362
_RS21915
Position (kb) 473
474 Strain fitness (log2 ratio) -1
0
1 at 472.179 kb on + strand, within BPHYT_RS21900 at 472.180 kb on - strand, within BPHYT_RS21900 at 472.180 kb on - strand, within BPHYT_RS21900 at 472.519 kb on + strand, within BPHYT_RS21900 at 472.646 kb on - strand, within BPHYT_RS21900 at 473.697 kb on + strand, within BPHYT_RS21905 at 474.212 kb on + strand, within BPHYT_RS21910 at 474.213 kb on - strand, within BPHYT_RS21910 at 474.485 kb on + strand, within BPHYT_RS21910 at 474.738 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO3 MOI 1 remove 472,179 + BPHYT_RS21900 0.18 -1.1 472,180 - BPHYT_RS21900 0.18 -0.8 472,180 - BPHYT_RS21900 0.18 +0.2 472,519 + BPHYT_RS21900 0.56 +0.3 472,646 - BPHYT_RS21900 0.70 +0.4 473,697 + BPHYT_RS21905 0.80 -1.0 474,212 + BPHYT_RS21910 0.38 +0.2 474,213 - BPHYT_RS21910 0.39 +1.5 474,485 + BPHYT_RS21910 0.75 +1.2 474,738 - -0.6
Or see this region's nucleotide sequence